Detailed information NTG0480355

Bioinformatically predicted

Overview

• Name: radA/sms
• Type: Machinery gene
• Locus tag: J5D25_RS01105
• Genome accession: NZ_CP071986
• Coordinates: 229254..230600 (+)
• Length: 448 a.a.
• NCBI ID: WP_209553990.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5124
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 224254..235600

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5D25_RS01075 (J5D25_01075)	-	224326..225180 (+)	855	WP_001894032.1	beta-1,4-N-acetylgalactosamyltransferase	-
J5D25_RS01080 (J5D25_01080)	-	225250..225801 (-)	552	WP_209553988.1	YbhB/YbcL family Raf kinase inhibitor-like protein	-
J5D25_RS01085 (J5D25_01085)	-	225944..226408 (+)	465	WP_001934390.1	helix-turn-helix domain-containing protein	-
J5D25_RS01090 (J5D25_01090)	-	226577..227740 (+)	1164	WP_000941679.1	NifS family cysteine desulfurase	-
J5D25_RS01095 (J5D25_01095)	-	227762..228742 (+)	981	WP_209553989.1	iron-sulfur cluster assembly scaffold protein	-
J5D25_RS01100 (J5D25_01100)	-	228907..229140 (+)	234	WP_000858673.1	ribbon-helix-helix domain-containing protein	-
J5D25_RS01105 (J5D25_01105)	radA/sms	229254..230600 (+)	1347	WP_209553990.1	DNA repair protein RadA	Machinery gene
J5D25_RS01110 (J5D25_01110)	msrB	230724..231803 (+)	1080	WP_209553991.1	peptide-methionine (R)-S-oxide reductase MsrB	-
J5D25_RS01115 (J5D25_01115)	-	232203..233036 (-)	834	WP_000392997.1	sulfite exporter TauE/SafE family protein	-
J5D25_RS01120 (J5D25_01120)	hopM	233247..235328 (-)	2082	WP_283957813.1	Hop family outer membrane protein HopM/HopN	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 49492.52 Da
• Isoelectric Point: 8.0293

>NTDB_id=480355 J5D25_RS01105 WP_209553990.1 229254..230600(+) (radA/sms) [Helicobacter pylori strain MT5124]
MAKKTSLFECQHCGFTSPKWLGKCVQCNAWESFIELNQTQKEVLHALKKPLPQAQKSVSIAAIEHEEVIKFSSTQSELDI
VLGGGIAKGGLYLVGGSPGVGKSTLLLKVASGLAKNQQKVLYVSGEESLSQIKMRATRLDCIEKELYLLNEINWPVIKAN
MESENYFACVIDSIQTLYSPEISSAPGSISQVREITFELMRLAKTRDIAIFIIGHITKEGSIAGPRVLEHMVDSVLYFEG
DPSRELRILRSFKNRFGPTSEIGLFEMKEQGLVSAKEASSLFFSKEEPMEGSAITITLEGSRALILEIQALVSECSFGAP
KRLANGFDTNRLNMLIALLEKKLEIPLNRHDVFINVSGGIKISEPACDLAVIASILSSFKNRKIDNKTAFLGEVSLNGRI
LEAPNLNARLKEMENYGFLKAILPKKPSQKTSIKCYEANVVGKIVEWM

Nucleotide

• Length: 1347 bp

>NTDB_id=480355 J5D25_RS01105 WP_209553990.1 229254..230600(+) (radA/sms) [Helicobacter pylori strain MT5124]
TTGGCTAAAAAAACTTCTTTATTTGAGTGTCAGCATTGCGGTTTTACAAGCCCTAAATGGCTAGGAAAGTGCGTTCAGTG
CAACGCATGGGAGAGTTTTATAGAATTGAACCAAACCCAAAAGGAAGTTTTACACGCGCTTAAAAAACCGCTCCCACAAG
CGCAAAAAAGCGTTTCTATCGCTGCAATTGAACATGAAGAAGTCATCAAGTTTTCTTCCACTCAAAGCGAGTTGGATATT
GTCTTAGGTGGGGGGATTGCTAAAGGGGGGTTGTATTTAGTGGGGGGGAGTCCTGGGGTGGGGAAATCCACTCTGCTTTT
AAAAGTGGCTTCTGGCTTAGCCAAAAACCAGCAAAAGGTTTTGTATGTGAGCGGGGAAGAGAGCTTGAGCCAGATTAAAA
TGCGCGCCACTAGATTGGATTGCATAGAAAAAGAATTGTATCTGCTCAATGAAATCAATTGGCCTGTGATTAAGGCTAAT
ATGGAAAGCGAAAATTATTTTGCTTGCGTGATTGATTCCATTCAAACGCTTTATTCGCCAGAGATTTCTTCAGCGCCCGG
CTCTATTTCGCAAGTGCGAGAGATCACTTTTGAGCTCATGCGTTTGGCGAAAACAAGAGATATTGCTATTTTTATCATCG
GTCATATCACTAAAGAAGGGAGCATCGCAGGCCCTAGGGTGCTAGAGCATATGGTAGATAGCGTGCTGTATTTTGAAGGT
GATCCCAGTAGGGAATTGAGGATTTTAAGGAGTTTTAAAAACCGCTTTGGCCCTACGAGTGAAATTGGCTTGTTTGAGAT
GAAAGAGCAGGGTTTGGTGAGCGCTAAAGAGGCTTCAAGCTTGTTTTTTTCTAAAGAAGAGCCTATGGAAGGGAGCGCGA
TTACCATTACTTTAGAAGGCTCAAGGGCGTTGATTTTAGAGATTCAGGCGTTGGTGAGCGAGTGCAGTTTTGGAGCGCCC
AAACGATTAGCGAACGGGTTTGACACTAACCGCCTTAACATGCTTATTGCTTTATTGGAAAAAAAGCTAGAAATCCCTTT
AAACCGCCATGATGTGTTCATTAATGTGAGCGGAGGCATTAAGATTAGCGAGCCGGCTTGCGATTTAGCGGTCATTGCCA
GTATCCTTTCAAGCTTTAAAAACAGAAAAATTGACAATAAAACGGCGTTTTTGGGCGAAGTGAGTTTGAATGGCAGGATT
TTAGAAGCCCCTAATTTGAACGCTAGATTGAAAGAAATGGAAAATTACGGCTTTTTAAAAGCCATTTTGCCCAAAAAACC
CAGTCAAAAAACTTCTATCAAATGCTATGAGGCTAATGTGGTGGGTAAGATTGTTGAGTGGATGTAG

Domains

Predicted by InterProScan.

• AAA domain (AAA_25) (66-220)

• Subunit ChlI of Mg-chelatase (ChlI) (344-426)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA/sms	Bacillus subtilis subsp. subtilis str. 168	46.838	95.313	0.446
radA	Streptococcus mitis SK321	46.479	95.089	0.442
radA	Streptococcus pneumoniae Rx1	46.479	95.089	0.442
radA	Streptococcus pneumoniae D39	46.479	95.089	0.442
radA	Streptococcus pneumoniae R6	46.479	95.089	0.442
radA	Streptococcus pneumoniae TIGR4	46.479	95.089	0.442
radA	Streptococcus mitis NCTC 12261	46.244	95.089	0.44