Detailed information NTG0480330

Bioinformatically predicted

Overview

• Name: uvrA
• Type: Machinery gene
• Locus tag: J5D26_RS03345
• Genome accession: NZ_CP071985
• Coordinates: 722374..725199 (-)
• Length: 941 a.a.
• NCBI ID: WP_209509113.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5119
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 717374..730199

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5D26_RS03335 (J5D26_03335)	-	719821..720294 (+)	474	WP_187946339.1	hypothetical protein	-
J5D26_RS03340 (J5D26_03340)	flgR	720291..721436 (+)	1146	WP_209509112.1	sigma-54 dependent transcriptional regulator	-
J5D26_RS03345 (J5D26_03345)	uvrA	722374..725199 (-)	2826	WP_209509113.1	excinuclease ABC subunit UvrA	Machinery gene
J5D26_RS03350 (J5D26_03350)	hopE	725364..726185 (+)	822	WP_156568385.1	Hop family outer membrane protein HopE	-
J5D26_RS03355 (J5D26_03355)	rsmH	726362..727288 (+)	927	WP_209509114.1	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	-
J5D26_RS03360 (J5D26_03360)	-	727309..727653 (+)	345	WP_209509115.1	hypothetical protein	-
J5D26_RS03365 (J5D26_03365)	-	728109..729011 (+)	903	WP_209509116.1	S-adenosyl-l-methionine hydroxide adenosyltransferase family protein	-

Sequence

Protein

• Length: 941 a.a.
• Molecular weight: 104662.56 Da
• Isoelectric Point: 8.1441

>NTDB_id=480330 J5D26_RS03345 WP_209509113.1 722374..725199(-) (uvrA) [Helicobacter pylori strain MT5119]
MQHKTIMDKIIIQGARENNLKNIFLEIPKNQFVVFTGLSGSGKSTLAFDTLYAEGQRRYLESLSSYARQFLDKVGKPNVD
KIEGLTPAIAIDQKTTSKNPRSTVGTITEIYDYLRLLFARIGEQFCPTCLEPISSMSASDIISQICHLEKNSKIIILAPI
IKDKKGSFNDKLESLRLKGYVRAFVDGVMVRLDEEIHLHKTKKHTIEAVVDRVVINSENSSRIASAVEKALKESYGELEV
EILQDNAPSIRKHYSEHKACFKCKMSFEELEPLSFSFNSPKGACESCLGLGTKFSLDISKILDPNTPLNQGAIKVIFGYN
RSYYAQMFEGFCAYNGIDSALCFNELNKEQQDALLYGNGTEISFHFKNSPLKRPWKGIIQIAYDMFKEQKDLSDYMSEKT
CSSCKGHRLKASSLSVQVAGLKMADFLTKPIEEVYHFFNDPTHFSYLNEQEKKIAEPILKEILERVFFLYDVGLGYLTLG
RDARTISGGESQRIRIASQIGSGLTGVLYVLDEPSIGLHEKDTLKLINTLRNLQKKGNTLIVVEHDKETIKHADFVVDIG
PKAGRHGGEVVFSGSVKDLLQNNHSTALYLNGTKKIERPKFEPPKEKHFLEIKNVNINNIKNLSVQIPLKQLVCITGVSG
SGKSSLILQTLLPTAQTLLNHAKKAQSLNGVEIVGLEHLDKVIYLDQAPIGKTPRSNPATYTGVMDEIRILFAEQKEAKI
LGYSASRFSFNVKGGRCEKCQGDGDIKIEMHFLPDVLVQCDSCKGAKYNPQTLEIKVKGKSIADVLNMSVEEAYEFFAKF
PKIAVKLKTLIDVGLGYITLGQNATTLSGGEAQRIKLAKELSKKDTGKTLYILDEPTTGLHFEDVNHLLQVLHSLVALGN
SMLVIEHNLDIIKNADYIIDMGPDGGDKGGRVIASGTPLEVAQNCEKTQSYTGKFLALELK

Nucleotide

• Length: 2826 bp

>NTDB_id=480330 J5D26_RS03345 WP_209509113.1 722374..725199(-) (uvrA) [Helicobacter pylori strain MT5119]
TTGCAACATAAAACCATTATGGATAAGATTATTATTCAAGGGGCTAGGGAAAATAATCTCAAAAATATTTTTTTAGAAAT
CCCTAAAAACCAATTTGTTGTTTTTACCGGATTAAGCGGTTCGGGTAAATCCACTCTGGCGTTTGACACTTTATACGCTG
AAGGCCAAAGGCGCTATTTAGAGAGTTTGTCTAGCTATGCTAGGCAATTTTTAGACAAAGTGGGTAAGCCTAATGTGGAT
AAAATTGAAGGCCTAACCCCTGCGATTGCTATTGATCAAAAAACCACTTCTAAAAACCCCAGATCCACTGTGGGGACGAT
CACTGAGATTTATGATTATTTAAGGTTGTTGTTTGCAAGGATTGGGGAGCAATTTTGCCCCACATGTTTAGAGCCTATTA
GTTCTATGAGCGCGAGCGATATCATTTCTCAAATCTGTCATTTAGAAAAAAATTCTAAAATCATTATTCTCGCTCCCATT
ATTAAAGATAAAAAAGGTTCGTTTAACGATAAATTAGAGAGCTTGCGTTTAAAGGGGTATGTGAGGGCTTTTGTTGATGG
GGTGATGGTGCGTTTAGATGAAGAAATCCATTTGCACAAAACCAAAAAACACACCATTGAAGCGGTGGTGGATAGGGTGG
TTATCAATAGCGAAAATTCTTCACGGATCGCTAGCGCAGTAGAAAAAGCCCTTAAAGAAAGCTATGGGGAATTAGAAGTG
GAAATCTTGCAAGACAACGCGCCAAGCATTAGGAAGCATTACAGCGAGCATAAGGCATGTTTTAAGTGTAAGATGAGTTT
TGAAGAATTAGAGCCTTTGAGTTTTTCCTTCAATTCGCCTAAAGGGGCGTGCGAAAGTTGCTTGGGTTTAGGGACAAAAT
TTAGCCTAGATATTAGTAAGATTTTAGATCCTAACACGCCTTTAAATCAAGGAGCGATTAAAGTCATTTTTGGGTATAAC
CGCAGTTATTACGCTCAAATGTTTGAAGGCTTTTGCGCTTATAATGGCATTGACAGCGCGCTTTGTTTTAACGAATTGAA
TAAAGAGCAGCAAGACGCTCTTTTGTATGGGAATGGCACTGAAATCAGCTTTCATTTTAAAAACAGCCCTTTAAAACGCC
CCTGGAAAGGCATTATCCAAATCGCTTATGACATGTTTAAAGAGCAAAAGGATTTGAGCGATTACATGAGCGAAAAAACC
TGTTCTTCATGCAAGGGGCATCGTTTGAAAGCCTCCAGTCTGAGCGTCCAAGTCGCTGGCTTGAAAATGGCGGATTTTTT
AACTAAGCCCATTGAAGAGGTTTATCATTTTTTTAATGATCCCACGCATTTTAGCTATCTTAACGAGCAAGAAAAAAAGA
TCGCTGAACCCATTTTAAAAGAGATTTTAGAAAGGGTGTTTTTTTTATACGATGTGGGGCTAGGGTATTTGACTTTGGGG
AGGGATGCGCGAACGATTAGCGGAGGGGAGAGCCAAAGGATACGAATCGCCAGTCAAATCGGGAGTGGTTTGACAGGGGT
TTTGTATGTTTTAGACGAGCCTAGCATTGGCTTGCATGAAAAGGATACGCTCAAACTCATCAACACCCTTAGGAATTTAC
AAAAAAAGGGGAACACGCTCATTGTCGTAGAGCATGATAAAGAGACGATTAAGCATGCGGATTTTGTTGTGGATATTGGG
CCAAAGGCTGGAAGGCATGGGGGTGAAGTGGTTTTTAGCGGGAGCGTGAAAGATTTATTGCAAAATAACCATTCTACCGC
TTTGTATCTCAACGGCACCAAAAAGATTGAGCGCCCCAAATTTGAACCCCCTAAAGAAAAGCATTTTTTAGAAATTAAAA
ATGTCAATATCAATAACATTAAGAATTTGAGCGTTCAAATCCCTTTAAAACAATTGGTGTGCATTACGGGGGTGAGCGGG
AGCGGTAAAAGCTCGCTGATTTTACAAACCCTTTTACCCACCGCTCAAACCCTTTTAAACCATGCTAAAAAAGCTCAGAG
TTTGAATGGGGTGGAGATTGTAGGGTTGGAGCATTTGGATAAAGTGATTTATTTGGATCAAGCCCCCATAGGCAAAACCC
CACGAAGCAACCCTGCCACTTACACAGGGGTGATGGATGAAATCAGGATTTTATTTGCCGAGCAAAAAGAAGCTAAAATT
TTAGGCTATAGCGCGAGCCGTTTTAGTTTTAATGTGAAAGGGGGGCGGTGCGAGAAATGCCAAGGCGATGGGGATATTAA
AATAGAAATGCATTTTTTGCCTGATGTGTTGGTCCAATGCGATAGCTGTAAGGGCGCTAAATACAACCCACAAACTTTAG
AAATCAAGGTTAAGGGTAAATCCATTGCCGATGTGTTGAACATGAGCGTGGAAGAGGCTTATGAATTTTTTGCTAAATTC
CCTAAAATCGCCGTGAAGTTAAAAACGCTTATAGATGTGGGCTTGGGCTATATCACTTTAGGGCAAAACGCTACCACTTT
AAGCGGGGGGGAGGCTCAAAGGATCAAATTGGCTAAAGAATTGAGTAAAAAAGACACAGGCAAAACCCTTTATATTTTAG
ATGAGCCCACCACCGGTTTGCATTTTGAAGACGTGAATCACCTTTTACAGGTTTTGCATTCTTTAGTGGCGTTAGGCAAT
TCCATGCTAGTGATTGAGCATAATTTAGACATTATCAAAAACGCTGATTACATTATAGACATGGGGCCTGATGGGGGGGA
TAAGGGCGGGAGAGTCATTGCGAGCGGCACGCCTTTAGAGGTGGCACAAAATTGCGAAAAAACCCAAAGCTACACGGGAA
AATTTTTAGCTTTGGAATTGAAATAG

Domains

Predicted by InterProScan.

• UvrA DNA-binding domain (UvrA_DNA-bind) (297-390)

• UvrA interaction domain (UvrA_inter) (137-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
uvrA	Streptococcus pneumoniae R6	49.843	100	0.507
uvrA	Streptococcus pneumoniae TIGR4	49.843	100	0.507
uvrA	Streptococcus pneumoniae D39	49.843	100	0.507