Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   IBG29_RS25445 Genome accession   NZ_CP061073
Coordinates   5462608..5463243 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain PAD8     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5457608..5468243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBG29_RS25430 (IBG29_08635) - 5458314..5459558 (+) 1245 WP_003118085.1 lipoprotein-releasing ABC transporter permease subunit -
  IBG29_RS25435 (IBG29_08630) - 5459646..5460179 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  IBG29_RS25440 (IBG29_08625) - 5460310..5462535 (+) 2226 Protein_5017 DNA internalization-related competence protein ComEC/Rec2 -
  IBG29_RS25445 (IBG29_08620) exbB 5462608..5463243 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IBG29_RS25450 (IBG29_08615) - 5463240..5463680 (+) 441 WP_034002330.1 biopolymer transporter ExbD -
  IBG29_RS25455 (IBG29_08610) lpxK 5463680..5464678 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  IBG29_RS25460 (IBG29_08605) - 5464716..5464901 (+) 186 WP_003091157.1 Trm112 family protein -
  IBG29_RS25465 (IBG29_08600) kdsB 5464901..5465665 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IBG29_RS25470 (IBG29_08595) - 5465665..5466129 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  IBG29_RS25475 (IBG29_08590) murB 5466126..5467145 (+) 1020 WP_003091153.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=480323 IBG29_RS25445 WP_003091163.1 5462608..5463243(+) (exbB) [Pseudomonas aeruginosa strain PAD8]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=480323 IBG29_RS25445 WP_003091163.1 5462608..5463243(+) (exbB) [Pseudomonas aeruginosa strain PAD8]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGTA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTTGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81