Detailed information NTG0480319

Bioinformatically predicted

Overview

• Name: radA/sms
• Type: Machinery gene
• Locus tag: J5D26_RS01095
• Genome accession: NZ_CP071985
• Coordinates: 227087..228433 (+)
• Length: 448 a.a.
• NCBI ID: WP_209508884.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5119
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 222087..233433

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5D26_RS01065 (J5D26_01065)	-	222200..223024 (+)	825	WP_209509165.1	beta-1,4-N-acetylgalactosamyltransferase	-
J5D26_RS01070 (J5D26_01070)	-	223093..223719 (-)	627	WP_209508883.1	YbhB/YbcL family Raf kinase inhibitor-like protein	-
J5D26_RS01075 (J5D26_01075)	-	223785..224249 (+)	465	WP_121502433.1	helix-turn-helix domain-containing protein	-
J5D26_RS01080 (J5D26_01080)	-	224420..225583 (+)	1164	WP_001941508.1	NifS family cysteine desulfurase	-
J5D26_RS01085 (J5D26_01085)	-	225605..226585 (+)	981	WP_001051954.1	iron-sulfur cluster assembly scaffold protein NifU	-
J5D26_RS01090 (J5D26_01090)	-	226744..226980 (+)	237	WP_000858669.1	ribbon-helix-helix domain-containing protein	-
J5D26_RS01095 (J5D26_01095)	radA/sms	227087..228433 (+)	1347	WP_209508884.1	DNA repair protein RadA	Machinery gene
J5D26_RS01100 (J5D26_01100)	msrB	228554..229633 (+)	1080	WP_209508885.1	peptide-methionine (R)-S-oxide reductase MsrB	-
J5D26_RS01105 (J5D26_01105)	-	230034..230867 (-)	834	WP_000393004.1	sulfite exporter TauE/SafE family protein	-
J5D26_RS01110 (J5D26_01110)	hopM	231078..233159 (-)	2082	WP_283957961.1	Hop family outer membrane protein HopM/HopN	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 49575.57 Da
• Isoelectric Point: 7.8133

>NTDB_id=480319 J5D26_RS01095 WP_209508884.1 227087..228433(+) (radA/sms) [Helicobacter pylori strain MT5119]
MAKKTSLFECQHCGFTSPKWLGKCVQCNAWESFIELNQAQKEVLHALKKPLPQAQKSVSIAEIEHEEVIKFSSTQSELDI
VLGGGIAKGGLYLVGGSPGVGKSTLLLKVASGLAKNQQKVLYVSGEESLSQIKMRATRLDCIEKELYLLNEINWPVIKAN
MESENYFACVIDSIQTLYSPEISSAPGSISQVREITFELMRLAKTRDIAIFIIGHITKEGSIAGPRVLEHMVDSVLYFEG
DPSRELRILRSFKNRFGPTSEIGLFEMKEQGLVSAKEASSLFFSKEEPMEGSAITITLEGSRALILEIQALVSECSFGAP
KRLANGFDTNRLNMLIALLEKKLEIPLNRHDVFINVSGGIKISEPACDLAVIASILSSFKNRKIDNKTAFLGEVSLNGRI
LEAPNLNARLKEMENYGFLKAILPKKPNQRTSIKCYEANVVGKIVEWM

Nucleotide

• Length: 1347 bp

>NTDB_id=480319 J5D26_RS01095 WP_209508884.1 227087..228433(+) (radA/sms) [Helicobacter pylori strain MT5119]
TTGGCTAAAAAAACTTCTTTATTTGAGTGTCAGCATTGCGGTTTTACAAGCCCTAAGTGGCTAGGAAAGTGCGTTCAGTG
CAACGCATGGGAGAGTTTTATAGAATTGAACCAAGCCCAAAAGGAAGTCTTACACGCGCTTAAAAAACCGCTCCCACAAG
CGCAAAAAAGCGTTTCTATCGCTGAAATTGAACATGAAGAAGTCATCAAGTTTTCTTCCACTCAAAGTGAGTTGGATATT
GTTTTAGGTGGGGGGATCGCTAAAGGGGGGCTGTATTTAGTGGGGGGGAGTCCTGGGGTGGGGAAATCCACTCTGCTTTT
AAAAGTGGCTTCTGGCTTAGCCAAAAACCAGCAAAAGGTTTTGTACGTGAGCGGGGAAGAGAGTTTGAGCCAGATTAAAA
TGCGCGCCACTAGATTAGATTGCATAGAAAAAGAATTGTATCTGCTCAATGAAATCAATTGGCCTGTGATTAAGGCTAAT
ATGGAAAGCGAAAATTATTTTGCTTGCGTGATTGATTCCATTCAAACGCTTTATTCGCCAGAGATTTCTTCAGCCCCCGG
CTCTATTTCGCAAGTGCGAGAGATCACTTTTGAGCTCATGCGTTTGGCCAAAACAAGAGATATTGCTATTTTTATCATCG
GCCATATCACTAAAGAAGGGAGCATCGCAGGCCCTAGAGTACTAGAGCATATGGTAGATAGCGTGCTGTATTTTGAGGGC
GATCCCAGTAGGGAATTAAGGATTTTAAGGAGTTTTAAAAACCGCTTTGGCCCTACGAGTGAAATCGGCTTGTTTGAGAT
GAAAGAGCAGGGTTTGGTGAGCGCCAAAGAAGCTTCAAGCTTGTTTTTTTCTAAAGAAGAGCCTATGGAAGGGAGCGCGA
TTACCATCACTTTAGAAGGATCAAGGGCGTTGATTTTAGAGATTCAGGCGTTGGTGAGCGAGTGCAGTTTCGGGGCACCC
AAACGATTGGCGAACGGGTTTGACACTAACCGCCTTAACATGCTCATCGCTTTATTGGAAAAAAAGCTAGAAATCCCCTT
AAACCGCCATGATGTGTTCATTAATGTGAGCGGAGGCATTAAGATTAGCGAGCCGGCTTGCGATTTAGCGGTCATTGCCA
GTATCCTTTCAAGCTTTAAAAACAGAAAAATTGACAATAAAACGGCGTTTTTGGGCGAAGTGAGTTTGAATGGCAGGATT
TTAGAAGCCCCTAATTTGAACGCCAGGTTGAAAGAAATGGAAAATTACGGCTTTTTAAAAGCCATTTTGCCCAAAAAACC
CAATCAAAGAACTTCTATCAAATGCTATGAGGCCAATGTGGTGGGTAAGATTGTTGAGTGGATGTGA

Domains

Predicted by InterProScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (344-426)

• AAA domain (AAA_25) (62-220)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA/sms	Bacillus subtilis subsp. subtilis str. 168	47.073	95.313	0.449
radA	Streptococcus mitis SK321	46.714	95.089	0.444
radA	Streptococcus pneumoniae Rx1	46.714	95.089	0.444
radA	Streptococcus pneumoniae D39	46.714	95.089	0.444
radA	Streptococcus pneumoniae R6	46.714	95.089	0.444
radA	Streptococcus pneumoniae TIGR4	46.714	95.089	0.444
radA	Streptococcus mitis NCTC 12261	46.479	95.089	0.442