Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IBG29_RS09930 Genome accession   NZ_CP061073
Coordinates   2121387..2122748 (-) Length   453 a.a.
NCBI ID   WP_034003240.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PAD8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2116387..2127748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBG29_RS09905 (IBG29_24150) yjiA 2116574..2117578 (-) 1005 WP_003094852.1 GTPase -
  IBG29_RS09910 (IBG29_24145) - 2117638..2117841 (-) 204 WP_003094856.1 YbdD/YjiX family protein -
  IBG29_RS09915 (IBG29_24140) - 2117890..2119956 (-) 2067 WP_003094859.1 carbon starvation CstA family protein -
  IBG29_RS09920 (IBG29_24135) - 2120294..2120800 (-) 507 WP_003094862.1 DUF3015 domain-containing protein -
  IBG29_RS09925 (IBG29_24130) mapZ 2121003..2121380 (+) 378 WP_003094864.1 cyclic di-GMP-binding protein MapZ -
  IBG29_RS09930 (IBG29_24125) radA 2121387..2122748 (-) 1362 WP_034003240.1 DNA repair protein RadA Machinery gene
  IBG29_RS09935 (IBG29_24120) - 2122858..2123292 (+) 435 WP_034003242.1 CopD family protein -
  IBG29_RS09940 (IBG29_24115) - 2123354..2123608 (-) 255 WP_003094873.1 YdcH family protein -
  IBG29_RS09945 (IBG29_24110) - 2123683..2124234 (-) 552 WP_079276589.1 ankyrin repeat domain-containing protein -
  IBG29_RS09950 (IBG29_24105) katB 2124288..2125829 (-) 1542 WP_003094881.1 catalase KatB -
  IBG29_RS09955 (IBG29_24100) - 2125826..2126314 (-) 489 WP_169433242.1 hypothetical protein -
  IBG29_RS09960 (IBG29_24095) mscL 2126357..2126770 (+) 414 WP_003104883.1 large-conductance mechanosensitive channel protein MscL -
  IBG29_RS09965 (IBG29_24090) - 2126875..2127651 (-) 777 WP_015648042.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48422.86 Da        Isoelectric Point: 6.8357

>NTDB_id=480305 IBG29_RS09930 WP_034003240.1 2121387..2122748(-) (radA) [Pseudomonas aeruginosa strain PAD8]
MAKAKRMYGCTECGATFPKWAGQCADCGAWNTLVETVVEAAPSGSGRGGWAGQQANLKTLAEVSVEEMPRFTTGSTELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLASRVPALYVTGEESQQQVAMRARRLSLPEDKLKVMTEISIETIIATA
RQEQPRVMVIDSIQTIFTEQLQSAPGGVAQVRESAAMLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEAVPGSVVMATWEGSRPMLVEVQALVDTSHLANP
RRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSGEV
RPVPSGQERLKEAGKHGFKRAIVPLGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=480305 IBG29_RS09930 WP_034003240.1 2121387..2122748(-) (radA) [Pseudomonas aeruginosa strain PAD8]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGTGGCGCGACCTTCCCGAAATGGGCCGGCCAGTGCGCGGACTG
CGGGGCCTGGAACACCCTGGTGGAGACCGTCGTCGAGGCCGCGCCGAGCGGCTCCGGCCGCGGCGGCTGGGCCGGCCAGC
AGGCCAACCTGAAGACCCTGGCGGAGGTCAGCGTCGAGGAAATGCCGCGCTTCACGACCGGCTCCACCGAACTGGACCGG
GTTCTCGGCGGCGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACCATTCTCCT
GCAGACCCTTTGCAACCTGGCCAGCCGCGTCCCGGCGCTGTATGTCACCGGCGAGGAATCCCAGCAGCAGGTGGCGATGC
GCGCGCGGCGCCTGTCGTTGCCGGAAGACAAGCTCAAGGTGATGACCGAGATCAGCATCGAAACCATCATCGCCACCGCG
CGCCAGGAGCAGCCGCGGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAGTTGCAATCGGCGCCGGGCGG
CGTCGCCCAGGTCCGCGAGAGCGCCGCGATGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATCTTCTTGGTCGGCC
ACGTGACCAAGGAAGGCGCCCTGGCCGGCCCGCGGGTGCTCGAACACATGGTGGACACCGTACTGTATTTCGAAGGCGAG
TCAGACGGCCGCCTGCGCCTGCTGCGGGCAGTGAAGAACCGCTTCGGCGCGGTCAACGAACTGGGAGTGTTCGGCATGAC
CGACAAAGGCCTGAAGGAAGTGAGCAACCCTTCGGCGATCTTCCTCACGCGGGCCCAGGAAGCGGTGCCCGGCAGCGTGG
TGATGGCCACCTGGGAAGGCTCGCGGCCGATGCTGGTGGAGGTCCAGGCGCTGGTCGACACCAGTCACCTGGCGAATCCG
CGGCGGGTGACCCTGGGCCTCGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGGCACGGTGGTATCCCGAC
CTACGACCAGGACGTGTTCCTCAACGTGGTGGGTGGGGTCAAGGTGCTGGAAACCGCCTCCGACCTGGCGTTGATGGCGG
CGGTGATGTCCAGCCTGCGCAACCGCCCGCTGCCGCACGACCTGCTGGTGTTCGGCGAGGTCGGGCTGTCCGGCGAGGTG
CGTCCGGTGCCGAGCGGCCAGGAGCGCCTGAAGGAAGCCGGCAAGCATGGTTTCAAGCGTGCCATCGTACCCCTCGGCAA
CGCGCCGAAGGAGGCGCCGGCGGGATTGCAGGTGATCGCCGTGACGCGCCTCGAGCAGGCCCTGGACGCCCTCTTCGAGT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(361-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.238

100

0.483
  radA Streptococcus mitis SK321

46.171

100

0.466
  radA Streptococcus pneumoniae Rx1

46.07

100

0.466
  radA Streptococcus pneumoniae D39

46.07

100

0.466
  radA Streptococcus pneumoniae R6

46.07

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.07

100

0.466
  radA Streptococcus mitis NCTC 12261

45.952

100

0.464