Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   J5D20_RS06005 Genome accession   NZ_CP071984
Coordinates   1285299..1286348 (+) Length   349 a.a.
NCBI ID   WP_209527848.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5114     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1280299..1291348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D20_RS05990 (J5D20_05990) - 1281478..1282449 (-) 972 WP_209525601.1 DUF874 family protein -
  J5D20_RS05995 (J5D20_05995) asd 1282882..1283922 (-) 1041 WP_209525603.1 aspartate-semialdehyde dehydrogenase -
  J5D20_RS06000 (J5D20_06000) hisS 1283909..1285237 (-) 1329 WP_209527846.1 histidine--tRNA ligase -
  J5D20_RS06005 (J5D20_06005) waaF 1285299..1286348 (+) 1050 WP_209527848.1 lipopolysaccharide heptosyltransferase II Regulator
  J5D20_RS06010 (J5D20_06010) - 1286483..1286860 (-) 378 WP_049788901.1 hypothetical protein -
  J5D20_RS06015 (J5D20_06015) - 1286984..1287354 (-) 371 Protein_1188 flagellar protein -
  J5D20_RS06020 (J5D20_06020) fusA 1287916..1289994 (-) 2079 WP_000101858.1 elongation factor G -
  J5D20_RS06025 (J5D20_06025) rpsG 1290006..1290473 (-) 468 WP_001254355.1 30S ribosomal protein S7 -
  J5D20_RS06030 (J5D20_06030) rpsL 1290489..1290896 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39420.09 Da        Isoelectric Point: 9.6680

>NTDB_id=480301 J5D20_RS06005 WP_209527848.1 1285299..1286348(+) (waaF) [Helicobacter pylori strain MT5114]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPTITCELFKKDEKIEAVFTDDTKRSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAITAAPKEYHQVEKYCFLFSQFLKKELDQKSVLPL
KLAFDLPAHTPNTPKKIGFNPSASYGSAKRWPASYYAEVAAALLEKGHEIYFFGAKEDTIVSEEILKLIKGSLKNPLLFH
NAYNLCGKTSIEELIQRIAVLDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKDEKNHLCMKSITPLEVLQAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=480301 J5D20_RS06005 WP_209527848.1 1285299..1286348(+) (waaF) [Helicobacter pylori strain MT5114]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGCTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCAACCATTACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTACAGATGACACCAAAAGATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACCTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTGTTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTGTTTCTCAGCCATGCGATAACTGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAATTAGCCTTTGATCTCCCCGCTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCGGCTTCTTATTACGCTGAAGTTGCGGCTGCTTTGTTGGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATACTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAATCCTTTATTGTTCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGCCCCATGCATGTGGCTGCTAGCGCGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCC
TTAAAGGATGAAAAAAACCATTTGTGCATGAAATCCATCACGCCCCTTGAAGTCCTTCAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.427

97.994

0.367