Detailed information NTG0480294

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: J5D20_RS04950
• Genome accession: NZ_CP071984
• Coordinates: 1058274..1059509 (+)
• Length: 411 a.a.
• NCBI ID: WP_097707777.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5114
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1053274..1064509

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5D20_RS04935 (J5D20_04935)	-	1053692..1055626 (+)	1935	WP_209525440.1	type IA DNA topoisomerase	-
J5D20_RS04940 (J5D20_04940)	-	1055756..1056742 (+)	987	WP_209525442.1	virB8 family protein	-
J5D20_RS04945 (J5D20_04945)	-	1056742..1058277 (+)	1536	WP_097707773.1	TrbG/VirB9 family P-type conjugative transfer protein	-
J5D20_RS04950 (J5D20_04950)	comB10	1058274..1059509 (+)	1236	WP_097707777.1	DNA type IV secretion system protein ComB10	Machinery gene
J5D20_RS04955 (J5D20_04955)	-	1059594..1059890 (+)	297	WP_097707780.1	hypothetical protein	-
J5D20_RS04960 (J5D20_04960)	-	1059880..1060143 (+)	264	WP_209525444.1	hypothetical protein	-
J5D20_RS04965 (J5D20_04965)	-	1060140..1060439 (+)	300	WP_097707782.1	hypothetical protein	-
J5D20_RS04970 (J5D20_04970)	-	1060439..1061381 (+)	943	Protein_990	ATPase, T2SS/T4P/T4SS family	-
J5D20_RS04975 (J5D20_04975)	-	1061378..1061833 (+)	456	WP_209525447.1	mobilization protein	-
J5D20_RS04980 (J5D20_04980)	-	1061830..1062120 (+)	291	WP_209525449.1	hypothetical protein	-
J5D20_RS08110	-	1062121..1062677 (+)	557	Protein_993	hypothetical protein	-
J5D20_RS04990 (J5D20_04990)	-	1062678..1064426 (+)	1749	Protein_994	type IV secretory system conjugative DNA transfer family protein	-

Sequence

Protein

• Length: 411 a.a.
• Molecular weight: 46511.67 Da
• Isoelectric Point: 10.1056

>NTDB_id=480294 J5D20_RS04950 WP_097707777.1 1058274..1059509(+) (comB10) [Helicobacter pylori strain MT5114]
MKKLLLLLEHKIVKIGLIIVIVLVGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINQVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDFNKTLIKPQSPSFNYNTANEEEKTRLVILASRISSQKETQSPISVKNSVSNIKSK
EKRELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGVDVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKRGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK

Nucleotide

• Length: 1236 bp

>NTDB_id=480294 J5D20_RS04950 WP_097707777.1 1058274..1059509(+) (comB10) [Helicobacter pylori strain MT5114]
ATGAAAAAACTTCTTTTACTCTTAGAGCATAAGATCGTAAAAATTGGATTAATTATTGTGATTGTGTTAGTGGGTTTTTT
TCTTTTTTATGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCCACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAAAATAAAATAGATACCATCAATCAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGCGCTAGTGCAAAAATTACCAAATTTGCCTAAGGACTTTAA
TAAAACACTTATTAAACCACAAAGTCCATCCTTCAACTACAATACCGCTAACGAAGAAGAAAAAACCCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGCCAAAAAGAAACGCAATCTCCCATTTCTGTGAAAAATAGCGTTTCTAACATAAAATCTAAA
GAAAAACGAGAGCTTGAAAAAGAATACGGCTCTAGCGGGTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTAAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGCAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGCGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGCTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAACAGGATCATCACGCCACAAGG
GGTTAATATTATTTTAAGCGATGCTAAGGGAGTTGATGTTAAGGGCTATAACGGCATGATAGGCACGCTCCATAACAAAT
ATTGGGAACGCTATGGTATCCCCTTATCCTTAAGCACTTTGTCAAACGGGTTACTCATAGGACTTACTAGCGGTCTTACT
GAAGCGATGAAAAACAAAAGAGGCGGTTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACAAGACAAAC
TGGTATCAGCCTGAATAACATTATCGCTCAAATCATGCGAGAGCAAATCAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCAAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (192-387)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	46.482	96.837	0.45