Detailed information NTG0480287

Bioinformatically predicted

Overview

• Name: uvrA
• Type: Machinery gene
• Locus tag: J5D20_RS03345
• Genome accession: NZ_CP071984
• Coordinates: 723240..726065 (-)
• Length: 941 a.a.
• NCBI ID: WP_209526481.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5114
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 718240..731065

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5D20_RS03330 (J5D20_03330)	gyrA	718492..720978 (+)	2487	WP_209528289.1	DNA topoisomerase (ATP-hydrolyzing) subunit A	-
J5D20_RS03335 (J5D20_03335)	-	720978..721451 (+)	474	WP_033613286.1	hypothetical protein	-
J5D20_RS03340 (J5D20_03340)	flgR	721448..722593 (+)	1146	WP_187919047.1	transcriptional activator FlgR	-
J5D20_RS03345 (J5D20_03345)	uvrA	723240..726065 (-)	2826	WP_209526481.1	excinuclease ABC subunit UvrA	Machinery gene
J5D20_RS03350 (J5D20_03350)	hopE	726230..727051 (+)	822	WP_156571067.1	Hop family outer membrane protein HopE	-
J5D20_RS03355 (J5D20_03355)	rsmH	727224..728150 (+)	927	WP_209526483.1	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	-
J5D20_RS03360 (J5D20_03360)	-	728171..728515 (+)	345	WP_001022682.1	hypothetical protein	-
J5D20_RS08230	-	728666..728851 (+)	186	WP_338403083.1	hypothetical protein	-
J5D20_RS03365 (J5D20_03365)	-	728997..729899 (+)	903	WP_097707240.1	S-adenosyl-l-methionine hydroxide adenosyltransferase family protein	-

Sequence

Protein

• Length: 941 a.a.
• Molecular weight: 104691.43 Da
• Isoelectric Point: 7.6219

>NTDB_id=480287 J5D20_RS03345 WP_209526481.1 723240..726065(-) (uvrA) [Helicobacter pylori strain MT5114]
MQHKTIMDKIIIQGARENNLKNIFLEIPKNQFVVFTGLSGSGKSTLAFDTLYAEGQRRYLESLSSYARQFLDKVGKPNVD
KIEGLTPAIAIDQKTTSKNPRSTVGTITEIYDYLRLLFARVGEQFCPTCLEPISSMSASDIISQICHLEENSKIIILAPI
IKDKKGSFNDKLESLRLKGYVRAFVDGVMVRLDEEIHLHKTKKHTIEAVVDRVVINSENASRIASAIEKALKESYGELEV
EILQDNAPSIRKHYSEHKACFKCKMSFEELEPLSFSFNSPKGACESCLGLGTKFSLDISKILDPNTPLNQGAIKVIFGYN
RSYYAQMFEGFCAYNGIDSALCFNELNKEQQDALLYGNGTEISFHFKNSPLKRPWKGIIQIAYDMFKEQKDLSDYMSEKT
CSSCNGHRLKASSLSVQVAGLKMADFLTKPIEEVYHFFNDPTHFSYLNEQEKKIAEPILKEILERVFFLYDVGLGYLTLG
RDARTISGGESQRIRIASQIGSGLTGVLYVLDEPSIGLHEKDTLKLINTLRNLQKKGNTLIVVEHDKETIKHADFVVDIG
PKAGRHGGEVVFSGSVKDLLQNNHSTALYLNGTKKIERPQFEPPKEKHFLEIKNVNINNIKNLSVQIPLKQLVCITGVSG
SGKSSLILQTLLPTAQTLLNHAKKAQSLNGVEIVGLEHLDKVIYLDQAPIGKTPRSNPATYTGVMDEIRILFAEQKEAKI
LGYSASRFSFNVKGGRCEKCQGDGDIKIEMHFLPDVLVQCDSCKGAKYNPQTLEIKVKGKSIADVLNMSVEEAYEFFAKF
PKIAVKLKTLIDVGLDYITLGQNATTLSGGEAQRIKLAKELSKKDTGKTLYILDEPTTGLHFEDVNHLLQVLHSLVALGN
SMLVIEHNLDIIKNADYIIDMGPDGGDKGGRVIASGTPLEVAQNCEKTQSYTGKFLALELK

Nucleotide

• Length: 2826 bp

>NTDB_id=480287 J5D20_RS03345 WP_209526481.1 723240..726065(-) (uvrA) [Helicobacter pylori strain MT5114]
TTGCAACATAAAACCATTATGGATAAGATCATTATTCAAGGGGCTAGGGAAAACAATCTCAAAAATATCTTTTTAGAAAT
CCCTAAAAACCAATTTGTTGTTTTTACCGGATTAAGCGGTTCGGGTAAATCCACTCTGGCGTTTGACACTCTATACGCTG
AAGGGCAAAGGCGCTATTTAGAGAGTTTGTCTAGTTATGCGAGGCAATTTTTAGACAAAGTGGGTAAGCCTAATGTGGAT
AAGATTGAAGGGCTAACCCCAGCGATCGCTATTGATCAAAAAACCACTTCTAAAAACCCTAGATCCACTGTGGGGACGAT
CACTGAGATTTATGATTATTTAAGGTTGTTGTTTGCAAGGGTTGGGGAGCAATTTTGCCCCACATGTTTAGAGCCTATTA
GTTCTATGAGCGCGAGCGATATTATTTCTCAAATCTGTCATTTAGAAGAAAATTCTAAAATCATTATTCTCGCCCCCATT
ATTAAAGATAAAAAAGGCTCGTTTAACGATAAATTAGAGAGCTTGCGTTTGAAGGGGTATGTGAGGGCTTTTGTTGATGG
GGTGATGGTGCGTTTAGATGAAGAAATCCATTTGCATAAAACCAAAAAACACACCATTGAAGCGGTGGTGGATAGGGTGG
TTATCAATAGCGAAAATGCTTCACGGATCGCTAGCGCAATAGAAAAAGCCCTTAAAGAAAGCTATGGGGAATTAGAAGTG
GAAATCTTGCAAGACAACGCGCCAAGCATAAGAAAGCATTACAGCGAACATAAGGCATGTTTTAAGTGTAAGATGAGTTT
TGAAGAATTAGAGCCTTTGAGTTTTTCTTTCAATTCGCCTAAAGGGGCGTGCGAAAGTTGCTTGGGTTTGGGGACAAAAT
TTAGCCTAGATATTAGTAAGATTTTAGATCCTAACACGCCTTTAAATCAAGGAGCGATCAAAGTGATTTTTGGGTATAAC
CGCAGTTATTACGCTCAAATGTTTGAAGGCTTTTGCGCTTATAATGGCATTGACAGCGCGCTTTGTTTCAACGAGTTGAA
TAAAGAGCAACAAGACGCTCTTTTGTATGGGAATGGCACTGAAATCAGCTTTCATTTTAAAAACAGCCCCTTGAAACGCC
CCTGGAAAGGCATTATCCAAATCGCTTATGACATGTTTAAAGAGCAAAAGGATTTGAGCGATTACATGAGCGAAAAAACC
TGTTCTTCGTGTAATGGGCATCGTTTGAAAGCTTCAAGTTTGAGCGTCCAAGTCGCTGGCTTGAAAATGGCGGATTTTTT
AACTAAGCCCATTGAAGAAGTCTATCATTTTTTTAATGATCCCACGCATTTTAGCTATCTTAACGAGCAAGAAAAAAAGA
TTGCTGAACCCATTTTAAAAGAGATTTTAGAAAGGGTGTTTTTTTTATACGATGTGGGGCTAGGGTATTTGACTTTAGGG
AGGGATGCGCGAACGATTAGCGGAGGGGAGAGCCAAAGGATACGAATCGCCAGTCAAATCGGGAGCGGTTTGACAGGGGT
TTTGTATGTTTTAGACGAGCCTAGCATTGGCTTGCATGAAAAGGACACCCTCAAACTCATCAACACCCTTAGAAATTTAC
AAAAAAAGGGGAACACGCTCATTGTCGTAGAGCATGATAAAGAGACGATTAAGCATGCGGATTTTGTTGTGGATATTGGG
CCAAAGGCTGGAAGGCATGGGGGTGAAGTGGTTTTTAGCGGGAGCGTAAAAGATTTATTGCAAAATAACCATTCTACCGC
CTTGTATCTCAACGGCACTAAAAAGATTGAGCGCCCCCAATTTGAACCCCCTAAAGAAAAGCATTTTTTAGAAATTAAAA
ATGTCAATATCAATAACATTAAGAATTTGAGCGTTCAAATCCCTTTAAAACAATTGGTGTGCATTACGGGGGTGAGCGGG
AGCGGTAAAAGCTCGTTGATTTTACAAACCCTTTTACCCACCGCTCAAACCCTTTTAAACCATGCTAAAAAAGCTCAAAG
TTTGAATGGGGTGGAAATTGTAGGGTTGGAGCATTTGGATAAAGTGATTTATTTGGATCAAGCCCCCATAGGCAAAACCC
CACGAAGCAACCCTGCCACTTACACAGGGGTGATGGATGAAATCAGGATTTTATTTGCCGAGCAAAAAGAAGCTAAAATT
TTAGGCTATAGCGCGAGCCGTTTTAGCTTTAATGTTAAAGGGGGGCGGTGTGAGAAATGCCAAGGCGATGGGGACATTAA
AATAGAAATGCACTTTTTGCCTGATGTGTTAGTCCAATGCGATAGCTGTAAGGGCGCTAAATACAACCCCCAAACTTTAG
AAATCAAGGTGAAAGGCAAATCCATTGCCGACGTGTTGAACATGAGCGTGGAAGAGGCTTATGAATTTTTTGCTAAATTC
CCTAAAATCGCCGTGAAGTTAAAAACGCTTATAGATGTGGGCTTGGACTATATCACTTTAGGGCAAAACGCTACGACTTT
AAGCGGGGGGGAGGCTCAAAGGATCAAATTGGCTAAAGAATTGAGTAAAAAAGACACAGGCAAAACCCTTTACATTTTAG
ATGAGCCTACTACCGGTTTGCATTTTGAAGACGTGAATCACCTTTTACAGGTTTTGCATTCTTTAGTGGCGTTAGGCAAT
TCCATGCTAGTGATTGAGCATAATTTAGACATTATCAAAAACGCTGATTACATTATAGACATGGGGCCTGATGGGGGGGA
TAAGGGTGGGAGAGTCATTGCGAGCGGCACGCCTTTAGAGGTGGCACAAAATTGCGAAAAAACCCAAAGCTACACGGGAA
AATTTTTAGCTTTGGAATTGAAATAG

Domains

Predicted by InterProScan.

• ABC transporter (ABC_tran) (621-857)

• UvrA interaction domain (UvrA_inter) (137-243)

• UvrA DNA-binding domain (UvrA_DNA-bind) (297-390)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
uvrA	Streptococcus pneumoniae R6	50.052	100	0.509
uvrA	Streptococcus pneumoniae TIGR4	50.052	100	0.509
uvrA	Streptococcus pneumoniae D39	50.052	100	0.509