Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   IBL27_RS09155 Genome accession   NZ_CP061071
Coordinates   1869788..1870501 (+) Length   237 a.a.
NCBI ID   WP_002262353.1    Uniprot ID   -
Organism   Streptococcus mutans B04Sm5     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1864788..1875501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBL27_RS09940 - 1865571..1865909 (-) 339 Protein_1765 lipase -
  IBL27_RS09145 (IBL27_09145) treC 1865993..1867621 (-) 1629 WP_002311336.1 alpha,alpha-phosphotrehalase -
  IBL27_RS09150 (IBL27_09150) treP 1867647..1869614 (-) 1968 WP_002308278.1 PTS system trehalose-specific EIIBC component -
  IBL27_RS09155 (IBL27_09155) treR 1869788..1870501 (+) 714 WP_002262353.1 trehalose operon repressor Regulator
  IBL27_RS09160 (IBL27_09160) dexA 1870847..1873399 (-) 2553 WP_080062387.1 dextranase DexA -
  IBL27_RS09165 (IBL27_09165) dtd 1873884..1874330 (-) 447 WP_002308282.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27795.12 Da        Isoelectric Point: 9.7425

>NTDB_id=480275 IBL27_RS09155 WP_002262353.1 1869788..1870501(+) (treR) [Streptococcus mutans B04Sm5]
MKKYEIIFKKLEEDILKGHYQMGDYLPPEMELSQTYASSRDTVRKALQLLTKAGFIKTVQGRGSQIIKRERINFPVSQLT
SYQELVKQLQMNVKTNVIAIDKLIIDEKLTKLTGFENKGLVWRITRQRVIDGVASILDTDYLDKALIPHMTREIAEHSIY
DYLENQLKLDIAYAQKIITIDQVSQKDKILLDLDSENHVVSVKSKVYLSNQQQFQFTESRHKLEKFRFVDFARRHRD

Nucleotide


Download         Length: 714 bp        

>NTDB_id=480275 IBL27_RS09155 WP_002262353.1 1869788..1870501(+) (treR) [Streptococcus mutans B04Sm5]
ATGAAAAAATATGAAATTATTTTTAAAAAACTAGAAGAAGATATTCTCAAAGGACACTATCAAATGGGTGACTATCTTCC
CCCTGAAATGGAACTTAGCCAGACCTATGCCAGCAGCCGAGATACTGTTAGAAAGGCTTTACAGCTCTTGACTAAGGCAG
GTTTTATTAAAACAGTACAGGGAAGAGGATCCCAAATTATCAAGCGTGAACGCATTAACTTTCCTGTCTCTCAACTAACC
AGCTATCAAGAATTGGTTAAACAATTGCAGATGAATGTCAAGACAAATGTTATTGCTATTGATAAACTGATTATTGATGA
GAAACTCACCAAACTAACCGGTTTTGAAAATAAAGGTCTTGTCTGGCGCATCACAAGACAGCGCGTAATAGACGGCGTTG
CTTCCATTTTAGATACGGATTATTTGGATAAAGCATTGATTCCTCATATGACCAGAGAAATCGCTGAACATTCTATCTAT
GATTATCTTGAAAATCAACTTAAGCTGGACATTGCCTATGCTCAAAAGATTATTACCATAGATCAAGTATCGCAAAAAGA
TAAAATTTTGCTTGATTTGGATTCTGAAAATCATGTCGTTTCGGTTAAATCTAAAGTTTATCTCAGTAATCAGCAGCAAT
TTCAATTCACTGAAAGCCGGCACAAACTGGAAAAGTTCCGTTTTGTTGACTTTGCCAGACGGCATCGTGATTAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(90-227)

Bacterial regulatory proteins, gntR family (GntR)

(4-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

99.578

100

0.996