Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   IBL27_RS07350 Genome accession   NZ_CP061071
Coordinates   1502181..1503221 (-) Length   346 a.a.
NCBI ID   WP_002285308.1    Uniprot ID   -
Organism   Streptococcus mutans B04Sm5     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1497181..1508221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBL27_RS07330 (IBL27_07330) - 1498614..1499150 (-) 537 WP_002276873.1 VanZ family protein -
  IBL27_RS07335 (IBL27_07335) rlmN 1499150..1500235 (-) 1086 WP_002264424.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  IBL27_RS07340 (IBL27_07340) - 1500232..1500780 (-) 549 WP_002268848.1 YutD family protein -
  IBL27_RS07345 (IBL27_07345) - 1500777..1502108 (-) 1332 WP_002308505.1 bifunctional metallophosphatase/5'-nucleotidase -
  IBL27_RS07350 (IBL27_07350) sepM 1502181..1503221 (-) 1041 WP_002285308.1 S16 family serine protease SepM Regulator
  IBL27_RS07355 (IBL27_07355) coaD 1503199..1503699 (-) 501 WP_002266330.1 pantetheine-phosphate adenylyltransferase -
  IBL27_RS07360 (IBL27_07360) rsmD 1503689..1504228 (-) 540 WP_002281871.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  IBL27_RS07365 (IBL27_07365) - 1504811..1506586 (-) 1776 WP_002288474.1 oleate hydratase -
  IBL27_RS07370 (IBL27_07370) - 1506707..1507273 (-) 567 WP_002267335.1 TetR/AcrR family transcriptional regulator -
  IBL27_RS07375 (IBL27_07375) - 1507472..1508107 (+) 636 WP_002288472.1 hypothetical protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 38010.94 Da        Isoelectric Point: 10.1221

>NTDB_id=480261 IBL27_RS07350 WP_002285308.1 1502181..1503221(-) (sepM) [Streptococcus mutans B04Sm5]
MKTNKKFKWWLISGISLILLLMVFFFPLPYYLEMPGGAYDIRSVVTVNHKEDKEKGSYNFVAVSLSKATPIQVLYAWLTP
FTEITSAKETTGGVSDADYMRINQFYMETSQNGAIYKALSLAHKKASFNYMGVYVLQVSKNSTFKGVLNIADTVTGVNDK
TFHSSKELIKYVSGLKLDSKVSVQYTSENKKKTAKGKVIKLSNGKNGIGIGLVDHTKVTSDDKIEFSTNGIGGPSAGLMF
TLDIYDQLVKEDLRKGRIIAGTGTIGEDGSVGDIGGADMKVAAADRINADIFFVPNNPVSKATLKKNPKALTNYQEAKQA
AKKLGTKMKIVPVKNVQEAIDYLRKH

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=480261 IBL27_RS07350 WP_002285308.1 1502181..1503221(-) (sepM) [Streptococcus mutans B04Sm5]
GTGAAAACAAACAAAAAATTTAAATGGTGGCTAATCAGCGGTATCAGTCTTATTTTGCTTTTAATGGTATTCTTTTTTCC
TCTTCCTTACTATTTAGAAATGCCCGGCGGAGCCTATGATATTCGTTCTGTTGTGACGGTTAATCATAAAGAAGATAAAG
AGAAAGGATCTTATAATTTTGTAGCTGTCTCTCTTAGTAAGGCAACCCCCATACAAGTCCTCTATGCTTGGTTGACCCCT
TTTACAGAAATTACCAGTGCCAAGGAAACAACTGGTGGTGTTAGTGATGCGGATTATATGAGAATTAATCAGTTTTATAT
GGAAACCTCACAAAATGGAGCTATCTATAAAGCTCTTTCTTTAGCTCATAAAAAGGCAAGCTTTAATTATATGGGTGTTT
ATGTTTTGCAGGTTAGTAAGAATTCAACATTCAAGGGTGTTTTAAATATTGCTGATACTGTAACAGGCGTTAATGACAAG
ACCTTTCATAGTTCAAAAGAATTGATTAAATATGTGTCTGGACTGAAATTAGACAGCAAGGTCAGTGTTCAATATACTTC
TGAAAATAAGAAGAAAACAGCCAAGGGCAAAGTTATTAAATTGTCAAATGGCAAAAATGGTATTGGCATTGGTCTGGTTG
ATCATACCAAGGTCACTTCTGATGATAAAATCGAATTTAGCACAAATGGTATTGGAGGGCCAAGTGCCGGTCTCATGTTT
ACCCTTGATATTTACGATCAACTAGTGAAAGAGGACTTACGTAAGGGCCGTATTATTGCAGGTACTGGTACTATTGGAGA
AGACGGGTCTGTTGGGGATATTGGCGGTGCTGATATGAAAGTGGCAGCAGCAGATAGGATTAATGCAGATATCTTTTTTG
TTCCCAATAATCCTGTAAGTAAGGCAACTTTGAAAAAAAATCCCAAAGCTCTCACTAATTATCAAGAAGCTAAGCAGGCT
GCTAAAAAATTAGGCACTAAGATGAAGATTGTTCCTGTTAAAAATGTGCAGGAGGCTATTGATTACCTAAGAAAACACTA
A

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(131-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

99.422

100

0.994