Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   IBL27_RS06800 Genome accession   NZ_CP061071
Coordinates   1385217..1387016 (-) Length   599 a.a.
NCBI ID   WP_002308333.1    Uniprot ID   -
Organism   Streptococcus mutans B04Sm5     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1380217..1392016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBL27_RS06780 (IBL27_06780) - 1381824..1382324 (-) 501 WP_002265403.1 LURP-one-related/scramblase family protein -
  IBL27_RS06785 (IBL27_06785) prsA 1382563..1383564 (-) 1002 WP_002261893.1 peptidylprolyl isomerase PrsA -
  IBL27_RS06790 (IBL27_06790) - 1383626..1384333 (-) 708 WP_002272060.1 O-methyltransferase -
  IBL27_RS06795 (IBL27_06795) - 1384383..1385000 (-) 618 WP_002308331.1 HAD-IA family hydrolase -
  IBL27_RS06800 (IBL27_06800) pepF 1385217..1387016 (-) 1800 WP_002308333.1 oligoendopeptidase F Regulator
  IBL27_RS06805 (IBL27_06805) - 1387038..1387976 (-) 939 WP_024784406.1 competence protein CoiA -
  IBL27_RS06810 (IBL27_06810) - 1388283..1389176 (-) 894 WP_002267117.1 alpha/beta hydrolase -
  IBL27_RS06815 (IBL27_06815) - 1389282..1389563 (-) 282 Protein_1319 hypothetical protein -
  IBL27_RS06820 (IBL27_06820) - 1389808..1390776 (-) 969 WP_002281301.1 alcohol dehydrogenase catalytic domain-containing protein -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 69799.43 Da        Isoelectric Point: 4.7395

>NTDB_id=480257 IBL27_RS06800 WP_002308333.1 1385217..1387016(-) (pepF) [Streptococcus mutans B04Sm5]
MSDNRSHIEEKYQWDLTSIFPNDQTWEKEEKSLAKDLEIAVKRAGHLLDSSQSLLEITELYLALIRRLEKLYVYASMKND
QDTTVSYYQELQAKATALIAKFNQTFAFYEPEFMLLSTEKYQDFLADCPDLLPYQHFFEKLFKQKKHVLSQKEEALLAEA
SEIFGAAGETFEILDNADIIFPWVKDETGEEVELSHGNFISLMESKNRKVRQEAYKAMYSIYEQYQHTYAKTLQTNVKVN
NFQAKIRNYKSAREAALAANFIPETVYDTSVEAVHNHLPLLQRYVKLRQNVLGLDDLKMYDIYVPLSEMDMTFTYEAALD
KAEEVLAIFGRDYAERVHRAFRERWIDVRVNKGKRSGAYSGGSYDTNAFILLNWQDTLDNLFTLVHETGHSLHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTEMLLKEVNDEKQRFAILNHYLDGFKGTVFRQTQFAEFEDLIYRADQAGDVLTSDY
LNNLYADLNEKYYGLSKKNNPEIQYEWARIPHFYYNFYVYQYATGFAAASFLAQKIVHGNQEDKDKYLNYLKAGNSDYPL
NVIAKAGLDMTDSTYLDQAFKVFEERLIELEELVEKGID

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=480257 IBL27_RS06800 WP_002308333.1 1385217..1387016(-) (pepF) [Streptococcus mutans B04Sm5]
ATGTCTGATAATCGCAGTCATATTGAAGAAAAATACCAATGGGATTTGACCAGCATTTTTCCAAACGATCAAACTTGGGA
AAAAGAGGAGAAATCTTTAGCTAAGGATTTGGAAATAGCCGTTAAAAGAGCAGGTCATCTGCTTGACTCCAGTCAAAGTC
TGCTGGAGATCACAGAACTTTATCTGGCTTTGATCCGTCGTTTGGAAAAACTTTATGTTTATGCTTCTATGAAGAATGAC
CAAGACACCACGGTCAGTTACTATCAAGAATTACAAGCTAAGGCAACAGCCTTGATCGCTAAATTTAATCAGACTTTTGC
CTTCTATGAGCCTGAATTTATGCTGTTATCAACAGAAAAATATCAGGATTTTTTGGCAGATTGTCCGGATTTATTGCCTT
ATCAACATTTTTTTGAAAAATTATTCAAACAAAAAAAGCATGTTCTTTCTCAAAAGGAAGAGGCACTTTTGGCTGAAGCC
AGTGAAATTTTTGGTGCTGCTGGTGAAACCTTTGAAATTCTTGACAATGCCGATATTATCTTTCCTTGGGTAAAAGACGA
GACAGGAGAAGAAGTTGAACTATCTCATGGTAATTTCATCAGTTTGATGGAATCCAAAAACCGCAAAGTTCGACAAGAAG
CTTATAAGGCCATGTACAGCATTTATGAGCAGTATCAACACACCTATGCTAAAACGCTGCAAACCAATGTTAAAGTTAAT
AATTTTCAAGCGAAAATCAGAAACTATAAGAGTGCGCGTGAAGCTGCTCTGGCAGCTAATTTTATTCCCGAAACTGTTTA
TGACACTTCAGTAGAAGCGGTCCATAATCACTTACCTTTGTTACAGCGTTATGTGAAGCTAAGGCAAAACGTTTTAGGCC
TTGATGATCTTAAGATGTATGATATTTACGTACCACTCTCAGAAATGGATATGACTTTTACTTATGAAGCAGCCTTGGAC
AAAGCAGAAGAAGTGTTAGCTATTTTTGGGCGAGACTATGCTGAGCGTGTGCATCGTGCATTTAGGGAGCGTTGGATTGA
TGTACGAGTCAATAAAGGCAAGCGTTCAGGTGCTTATTCAGGCGGATCCTATGACACCAATGCTTTTATATTACTTAACT
GGCAGGATACTTTGGATAATCTCTTCACTCTTGTTCATGAAACAGGACATTCTTTGCATTCTACTTTTACACGTGAAAAC
CAACCCTATGTTTATGGTGATTATTCTATTTTTCTGGCAGAAATTGCTTCGACAACCAATGAAAATATTTTAACTGAAAT
GCTTCTCAAAGAGGTAAATGATGAAAAGCAACGTTTTGCTATTCTGAATCATTACCTTGATGGTTTCAAAGGGACGGTTT
TCCGCCAAACACAATTTGCAGAATTTGAAGACTTGATTTATAGGGCTGATCAAGCAGGTGACGTTTTGACTAGTGATTAT
TTGAATAATCTCTATGCGGATCTCAATGAAAAATACTATGGTTTAAGCAAGAAAAATAATCCGGAAATTCAGTATGAATG
GGCTAGAATTCCGCATTTTTACTACAATTTTTATGTCTATCAGTACGCTACAGGCTTTGCCGCAGCTAGCTTTTTAGCTC
AAAAAATTGTTCATGGCAATCAAGAAGATAAGGACAAATATCTCAATTATCTCAAGGCTGGAAATTCAGACTATCCCCTC
AATGTTATTGCTAAAGCAGGTCTTGATATGACTGACTCGACCTATCTTGACCAAGCTTTCAAAGTCTTTGAAGAACGGTT
AATAGAGTTGGAAGAGTTGGTCGAAAAAGGAATTGATTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.231

99.833

0.691