Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   IBL27_RS05625 Genome accession   NZ_CP061071
Coordinates   1125971..1127725 (-) Length   584 a.a.
NCBI ID   WP_024784423.1    Uniprot ID   -
Organism   Streptococcus mutans B04Sm5     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1125971..1160051 1125971..1127725 within 0


Gene organization within MGE regions


Location: 1125971..1160051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBL27_RS05625 (IBL27_05625) rcrQ 1125971..1127725 (-) 1755 WP_024784423.1 ABC transporter ATP-binding protein Regulator
  IBL27_RS05630 (IBL27_05630) rcrP 1127715..1129517 (-) 1803 WP_019806057.1 ABC transporter ATP-binding protein Regulator
  IBL27_RS05635 (IBL27_05635) rcrR 1129521..1129955 (-) 435 WP_002263292.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  IBL27_RS05640 (IBL27_05640) queC 1130507..1131160 (+) 654 WP_002309517.1 7-cyano-7-deazaguanine synthase QueC -
  IBL27_RS05645 (IBL27_05645) queD 1131160..1131606 (+) 447 WP_002266457.1 6-carboxytetrahydropterin synthase QueD -
  IBL27_RS05650 (IBL27_05650) queE 1131603..1132319 (+) 717 WP_002263289.1 7-carboxy-7-deazaguanine synthase QueE -
  IBL27_RS05655 (IBL27_05655) queF 1132332..1132820 (+) 489 WP_002265143.1 preQ(1) synthase -
  IBL27_RS05660 (IBL27_05660) - 1132929..1133312 (+) 384 WP_002270896.1 DUF3021 family protein -
  IBL27_RS05665 (IBL27_05665) gdhA 1133422..1134771 (-) 1350 WP_002263849.1 NADP-specific glutamate dehydrogenase -
  IBL27_RS05670 (IBL27_05670) - 1135533..1136039 (+) 507 WP_002308000.1 DUF308 domain-containing protein -
  IBL27_RS05675 (IBL27_05675) gtfD 1136263..1140651 (-) 4389 WP_002307999.1 glucosyltransferase-S -
  IBL27_RS05680 (IBL27_05680) - 1140871..1141791 (-) 921 WP_002269023.1 AEC family transporter -
  IBL27_RS05685 (IBL27_05685) - 1141907..1143679 (-) 1773 WP_002283302.1 ABC transporter ATP-binding protein -
  IBL27_RS05690 (IBL27_05690) - 1143690..1145426 (-) 1737 WP_024784361.1 ABC transporter ATP-binding protein -
  IBL27_RS05695 (IBL27_05695) - 1145882..1147750 (-) 1869 WP_002307997.1 ABC-F family ATP-binding cassette domain-containing protein -
  IBL27_RS05700 (IBL27_05700) - 1147753..1148958 (-) 1206 WP_002307996.1 CCA tRNA nucleotidyltransferase -
  IBL27_RS05705 (IBL27_05705) dapB 1148955..1149722 (-) 768 WP_002307995.1 4-hydroxy-tetrahydrodipicolinate reductase -
  IBL27_RS05710 (IBL27_05710) - 1149734..1150579 (-) 846 WP_002311096.1 DegV family protein -
  IBL27_RS05715 (IBL27_05715) - 1150585..1150959 (-) 375 WP_002262891.1 DUF1149 family protein -
  IBL27_RS05720 (IBL27_05720) - 1151068..1152609 (-) 1542 WP_002307992.1 hypothetical protein -
  IBL27_RS05725 (IBL27_05725) - 1152596..1153312 (-) 717 WP_002265102.1 ABC transporter ATP-binding protein -
  IBL27_RS05730 (IBL27_05730) - 1153387..1153992 (-) 606 WP_002265101.1 TetR/AcrR family transcriptional regulator -
  IBL27_RS05735 (IBL27_05735) - 1154156..1154659 (-) 504 WP_002266538.1 phosphatase PAP2 family protein -
  IBL27_RS05740 (IBL27_05740) - 1154902..1155981 (-) 1080 WP_002262882.1 serine hydrolase domain-containing protein -
  IBL27_RS05745 (IBL27_05745) galE 1156249..1157250 (-) 1002 WP_002262881.1 UDP-glucose 4-epimerase GalE -
  IBL27_RS05750 (IBL27_05750) galT 1157399..1158874 (-) 1476 WP_002307989.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  IBL27_RS05755 (IBL27_05755) - 1158879..1160051 (-) 1173 WP_002271493.1 galactokinase -

Sequence

Protein


Download         Length: 584 a.a.        Molecular weight: 64535.54 Da        Isoelectric Point: 5.9195

>NTDB_id=480252 IBL27_RS05625 WP_024784423.1 1125971..1127725(-) (rcrQ) [Streptococcus mutans B04Sm5]
MENKKKSLLSQMAPYLKGYKALFGLAVIFTIVSSTITVIGPDRLKEMTDTMTKGLAGKIDLDKIGEIALTLALLYFAGAL
VSYTASFIVSTLIQKFSQRLRNAIADKINKVPLKYFDSHSQGDTLSRVTNDVDLMTQSFNQSLVSMVAAIILLIGSIFMM
IKTNGALAATAILSVFAGFVVSTVIMSKSQPLFKKQQANLADVSGYVEEVYSGHNVVSSYNAIQQSKKQFENLNDQLFAS
MWKSQFFSGIMMPLMQFIGNFGYVMVCIVGATMAINGDITMGTIVAFMTYVRIFTQPIAQIAQGITQLQSANAAMGRVFE
FLDEEEIEDENHKVKQLEKVEGNVNFGNVFFGYSPDKTIIHDFSAHAKAGQKIAIVGPTGAGKTTIVNLLMRFYEVDRGM
ISIDGVNIHDMTREEVHDAFAMVLQDTWLFEGTVKENLIYNQKHITDEQVIAAAKAVGVHHFIKTLPKGYDTVLDDSVTL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQRAMDHLMEGRTSFVIAHRLSTIRNADLILVMRDGNIIEQGS
HDQLMAENGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1755 bp        

>NTDB_id=480252 IBL27_RS05625 WP_024784423.1 1125971..1127725(-) (rcrQ) [Streptococcus mutans B04Sm5]
ATGGAAAATAAGAAGAAATCATTATTAAGCCAAATGGCTCCTTACCTTAAAGGCTATAAGGCTTTATTTGGACTTGCTGT
CATTTTTACTATCGTTTCAAGTACGATTACTGTTATTGGACCTGACCGGCTGAAAGAGATGACAGATACCATGACCAAAG
GGCTGGCAGGAAAAATTGATTTAGATAAAATCGGTGAGATTGCTCTAACCTTGGCTCTCTTATACTTTGCTGGTGCTTTG
GTTTCTTATACTGCTAGCTTTATTGTGTCCACTTTGATTCAAAAGTTTTCGCAACGTCTGCGCAATGCCATTGCAGATAA
AATCAATAAGGTACCGCTCAAATATTTTGACAGCCATTCACAAGGAGATACCTTGTCTCGAGTGACCAATGATGTGGATT
TAATGACACAGTCTTTCAACCAAAGTTTAGTTTCAATGGTAGCAGCTATAATTCTCCTGATTGGCTCTATTTTCATGATG
ATTAAAACCAATGGAGCTCTTGCAGCGACCGCTATTTTGTCTGTTTTTGCTGGTTTTGTGGTATCCACTGTTATCATGTC
CAAGAGTCAGCCGCTTTTTAAAAAGCAACAAGCTAATCTAGCCGATGTCAGCGGTTATGTTGAAGAGGTCTATTCAGGTC
ATAATGTGGTTTCTAGTTACAATGCGATTCAGCAAAGCAAGAAGCAGTTTGAAAACTTGAATGACCAATTATTTGCAAGT
ATGTGGAAATCACAATTCTTTTCTGGAATTATGATGCCCCTTATGCAATTCATCGGAAATTTTGGGTATGTCATGGTCTG
TATTGTCGGTGCTACCATGGCTATTAACGGCGATATTACTATGGGAACGATTGTTGCCTTTATGACTTACGTCCGTATTT
TTACTCAGCCCATTGCGCAGATTGCTCAAGGAATCACTCAATTGCAATCAGCTAATGCTGCTATGGGACGTGTCTTTGAA
TTTCTTGATGAGGAAGAAATAGAAGACGAAAACCATAAAGTTAAACAACTTGAAAAAGTTGAAGGAAATGTTAATTTTGG
CAATGTTTTCTTTGGTTATAGTCCTGATAAAACTATTATTCATGATTTCTCGGCTCATGCTAAGGCTGGTCAAAAAATTG
CTATTGTGGGACCGACTGGTGCGGGTAAGACAACGATTGTTAACTTACTTATGCGTTTCTATGAGGTTGATAGAGGGATG
ATTTCTATTGATGGAGTTAATATCCATGATATGACACGAGAAGAAGTGCATGATGCTTTTGCCATGGTACTCCAAGATAC
TTGGCTCTTTGAAGGTACAGTTAAGGAAAATCTGATTTATAATCAAAAACATATTACTGATGAGCAAGTGATTGCAGCAG
CTAAGGCAGTTGGTGTTCATCATTTCATCAAGACTTTACCTAAGGGTTATGATACTGTTTTAGATGATTCGGTCACCTTA
TCAGTCGGTCAAAAACAACTCTTGACCATTGCACGTGCTCTTCTTAAAGATGCACCGCTTCTGATTCTTGATGAAGCAAC
TTCCTCTGTTGATACTCGTACGGAAGAACTTATTCAAAGGGCTATGGATCATTTGATGGAGGGGCGGACATCATTCGTTA
TTGCCCATCGTCTGTCAACTATTCGCAATGCTGATCTTATTCTTGTCATGAGAGATGGTAATATTATTGAACAAGGCAGC
CATGACCAATTGATGGCAGAAAATGGCTTCTATGCCGATCTCTATAATAGTCAATTTACAGAAGAAGTGGCTTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(24-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

99.315

100

0.993