Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   IBL27_RS03655 Genome accession   NZ_CP061071
Coordinates   720669..721562 (-) Length   297 a.a.
NCBI ID   WP_002272311.1    Uniprot ID   -
Organism   Streptococcus mutans B04Sm5     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 715669..726562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBL27_RS03630 (IBL27_03630) cas1 717591..718457 (+) 867 WP_002264919.1 type II CRISPR-associated endonuclease Cas1 -
  IBL27_RS03635 (IBL27_03635) cas2 718454..718798 (+) 345 WP_002308624.1 CRISPR-associated endonuclease Cas2 -
  IBL27_RS03640 (IBL27_03640) csn2 718788..719450 (+) 663 WP_002263546.1 type II-A CRISPR-associated protein Csn2 -
  IBL27_RS03645 (IBL27_03645) - 719547..719738 (+) 192 WP_002265423.1 type II toxin-antitoxin system HicA family toxin -
  IBL27_RS03650 (IBL27_03650) - 719756..720133 (+) 378 WP_002269450.1 type II toxin-antitoxin system HicB family antitoxin -
  IBL27_RS03655 (IBL27_03655) irvR 720669..721562 (-) 894 WP_002272311.1 LexA family transcriptional regulator IrvR Regulator
  IBL27_RS03660 (IBL27_03660) - 721878..722162 (+) 285 WP_002278032.1 helix-turn-helix transcriptional regulator -
  IBL27_RS03665 (IBL27_03665) gbpC 722325..724076 (+) 1752 WP_024784392.1 glucan-binding protein GbpC -
  IBL27_RS09865 - 724207..724437 (+) 231 WP_002282891.1 hypothetical protein -
  IBL27_RS09965 - 724472..724600 (+) 129 WP_002262718.1 hypothetical protein -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 33625.32 Da        Isoelectric Point: 6.7036

>NTDB_id=480244 IBL27_RS03655 WP_002272311.1 720669..721562(-) (irvR) [Streptococcus mutans B04Sm5]
MGRGKLTPQDLEAMKAISANLQRLLAESGMKQSHLATILNIPTSSLNEYVKGKSLPKIGNIQKIADYFGLQKSDIDPRFA
SKKDSSTLDKINHIAKQLEMKRQIKVLDFCYQQSKEQDETASLSASDETTDDKVADKSNHTQYQKVVDSFIAKELNDQTI
IHWDNVIKAKDLYQTFGRQYENIQIYGEVSAGTGIWVGHEKQETIKYPIPIPEHDIALTVNGNSMEPLFYNGDVIFVKKT
KAIHHGQIIVVIVNNEAYVKKLYRKNKEIRLISLNPDYDDIILKEDDTIEVIGTVIT

Nucleotide


Download         Length: 894 bp        

>NTDB_id=480244 IBL27_RS03655 WP_002272311.1 720669..721562(-) (irvR) [Streptococcus mutans B04Sm5]
ATGGGACGCGGTAAATTAACTCCACAAGATTTAGAAGCAATGAAGGCTATTTCTGCCAATCTTCAAAGACTTCTAGCTGA
GAGCGGAATGAAACAATCTCACTTAGCCACTATCCTTAACATTCCTACAAGTAGTCTTAATGAATATGTTAAAGGAAAGA
GTTTGCCAAAAATAGGGAATATTCAAAAAATCGCAGATTATTTTGGTCTCCAAAAATCCGATATTGACCCTAGATTTGCA
AGTAAAAAGGACTCTTCTACTCTTGATAAAATTAATCATATTGCCAAACAATTAGAAATGAAGAGACAGATAAAAGTCTT
AGATTTCTGTTACCAACAATCAAAGGAACAAGATGAAACAGCAAGCTTATCTGCCAGTGATGAAACGACTGATGATAAAG
TTGCTGACAAATCAAATCATACGCAGTATCAAAAGGTTGTTGATTCTTTTATTGCCAAAGAATTAAACGATCAGACAATT
ATTCATTGGGATAATGTGATAAAAGCTAAGGATTTGTATCAAACCTTTGGACGTCAATACGAAAACATTCAGATTTATGG
TGAAGTTTCAGCTGGTACTGGTATCTGGGTTGGACATGAAAAACAAGAAACCATTAAATACCCAATACCAATTCCAGAAC
ATGATATTGCTCTTACTGTCAATGGTAATAGTATGGAACCTTTATTTTACAACGGTGACGTTATTTTTGTTAAAAAGACT
AAAGCTATCCATCACGGACAAATTATCGTTGTTATTGTAAATAATGAGGCATATGTCAAAAAACTCTACCGAAAAAACAA
AGAAATTCGACTCATCTCATTAAATCCAGATTATGATGACATCATTTTAAAAGAAGATGATACAATTGAAGTCATCGGAA
CGGTCATTACCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(22-70)

Peptidase S24-like (Peptidase_S24)

(184-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

99.327

100

0.993