Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   J5D21_RS02050 Genome accession   NZ_CP071982
Coordinates   424204..425379 (-) Length   391 a.a.
NCBI ID   WP_209612158.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5135     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 419204..430379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D21_RS02015 (J5D21_02015) - 419532..419846 (+) 315 WP_001265943.1 hypothetical protein -
  J5D21_RS02020 (J5D21_02020) - 419824..420591 (+) 768 WP_209612150.1 RNA polymerase sigma factor FliA -
  J5D21_RS02025 (J5D21_02025) fliM 420584..421648 (+) 1065 WP_000763586.1 flagellar motor switch protein FliM -
  J5D21_RS02030 (J5D21_02030) fliY 421652..422506 (+) 855 WP_209612152.1 flagellar motor switch protein FliY -
  J5D21_RS02035 (J5D21_02035) - 422535..423071 (+) 537 WP_209612154.1 YhcH/YjgK/YiaL family protein -
  J5D21_RS02040 (J5D21_02040) - 423068..423571 (+) 504 WP_156581700.1 DUF2147 domain-containing protein -
  J5D21_RS02045 (J5D21_02045) fur 423592..424044 (-) 453 WP_209612156.1 transcriptional repressor -
  J5D21_RS02050 (J5D21_02050) rarA 424204..425379 (-) 1176 WP_209612158.1 replication-associated recombination protein A Machinery gene
  J5D21_RS02055 (J5D21_02055) - 425376..425747 (-) 372 WP_000272469.1 heat shock protein transcriptional repressor HspR -
  J5D21_RS02060 (J5D21_02060) - 425757..426623 (-) 867 WP_209612159.1 DnaJ C-terminal domain-containing protein -
  J5D21_RS02065 (J5D21_02065) - 426791..428041 (+) 1251 WP_209612161.1 hypothetical protein -
  J5D21_RS02070 (J5D21_02070) - 428136..428973 (-) 838 Protein_408 5'-3' exonuclease -
  J5D21_RS02075 (J5D21_02075) - 429229..430125 (-) 897 WP_021171619.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43858.46 Da        Isoelectric Point: 8.5290

>NTDB_id=480244 J5D21_RS02050 WP_209612158.1 424204..425379(-) (rarA) [Helicobacter pylori strain MT5135]
MSLTALLNPTSLEDFLGQEHLIGKDTPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARSLERPILSFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLNRLCDK
ALALLKKQIEPDAKTYLLNNSAGDARALLNLLDLSAKIENPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLASSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGLLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=480244 J5D21_RS02050 WP_209612158.1 424204..425379(-) (rarA) [Helicobacter pylori strain MT5135]
ATGAGCCTGACTGCGCTTTTAAACCCCACAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACACCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCTTGG
CTCAAATCATCGCTCGCTCCCTAGAGCGCCCCATTCTTTCATTTAATGCGACGGATTTCAAATTGGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
GGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTGACCCCCTTAAAAAAGAGCGATTTAAACAGGCTTTGCGATAAG
GCTTTAGCATTGTTAAAAAAACAAATAGAGCCTGACGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAAAAACCTTGCAATCCTTACGGCCCCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAACCTCACTAGCGCGCTCATTAAATCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCTCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAGTGCGTGATTTATCTGGCTTGTTCGCCTAAGTCTAACACGGCCTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTTGCTCTACCCTATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTATCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTAGAAAAACCCCTCAATTTGGTTTCTTCTC
AAGGTATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAAATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.136

100

0.391