Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   J5D21_RS00535 Genome accession   NZ_CP071982
Coordinates   108944..109402 (-) Length   152 a.a.
NCBI ID   WP_164855384.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5135     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 103944..114402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D21_RS00520 (J5D21_00520) - 104321..105112 (-) 792 WP_209611884.1 glycosyltransferase family 2 protein -
  J5D21_RS00525 (J5D21_00525) tlpB 105144..106841 (-) 1698 WP_209611886.1 methyl-accepting chemotaxis protein -
  J5D21_RS00530 (J5D21_00530) - 107055..108767 (-) 1713 WP_338034385.1 bifunctional metallophosphatase/5'-nucleotidase -
  J5D21_RS00535 (J5D21_00535) luxS 108944..109402 (-) 459 WP_164855384.1 S-ribosylhomocysteine lyase Regulator
  J5D21_RS00540 (J5D21_00540) - 109440..110582 (-) 1143 WP_209611889.1 cystathionine gamma-synthase -
  J5D21_RS00545 (J5D21_00545) - 110607..111524 (-) 918 WP_209611891.1 cysteine synthase family protein -
  J5D21_RS07685 - 111643..112221 (+) 579 Protein_103 hypothetical protein -
  J5D21_RS00555 (J5D21_00555) dnaK 112465..114327 (-) 1863 WP_209611894.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17354.76 Da        Isoelectric Point: 6.6035

>NTDB_id=480233 J5D21_RS00535 WP_164855384.1 108944..109402(-) (luxS) [Helicobacter pylori strain MT5135]
MKMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEIIRNHANYVVDWSPMGC
QTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAKNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=480233 J5D21_RS00535 WP_164855384.1 108944..109402(-) (luxS) [Helicobacter pylori strain MT5135]
ATGAAAATGAATGTAGAGAGTTTCAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTGTCGCTGATCGCAAAAA
GGGCGTTAATGGGGATTTGATTGTCAAATACGATGTGCGCTTCAAGCAGCCCAACCAAGATCACATGGACATGCCAAGCC
TGCATTCTTTAGAGCATTTAGTCGCTGAAATTATCCGCAACCATGCCAATTATGTCGTGGATTGGTCGCCTATGGGTTGC
CAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGACAATGCAAGA
TGTGCTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAGAGGGTGCTA
AGAATTTAGCGCGCGCTTTTTTGGACAAACGCGCTGAATGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

42.553

92.763

0.395