Detailed information NTG0480193

Bioinformatically predicted

Overview

• Name: radA/sms
• Type: Machinery gene
• Locus tag: J5D27_RS01075
• Genome accession: NZ_CP071981
• Coordinates: 227230..228576 (+)
• Length: 448 a.a.
• NCBI ID: WP_002205897.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5111
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 222230..233576

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5D27_RS01045 (J5D27_01045)	-	222332..223156 (+)	825	WP_249936589.1	beta-1,4-N-acetylgalactosamyltransferase	-
J5D27_RS01050 (J5D27_01050)	-	223224..223850 (-)	627	WP_209526087.1	YbhB/YbcL family Raf kinase inhibitor-like protein	-
J5D27_RS01055 (J5D27_01055)	-	223916..224380 (+)	465	WP_209526089.1	helix-turn-helix domain-containing protein	-
J5D27_RS01060 (J5D27_01060)	-	224551..225714 (+)	1164	WP_209526091.1	NifS family cysteine desulfurase	-
J5D27_RS01065 (J5D27_01065)	-	225736..226716 (+)	981	WP_001051953.1	iron-sulfur cluster assembly scaffold protein NifU	-
J5D27_RS01070 (J5D27_01070)	-	226881..227114 (+)	234	WP_000858673.1	ribbon-helix-helix domain-containing protein	-
J5D27_RS01075 (J5D27_01075)	radA/sms	227230..228576 (+)	1347	WP_002205897.1	DNA repair protein RadA	Machinery gene
J5D27_RS01080 (J5D27_01080)	msrB	228700..229779 (+)	1080	WP_000866569.1	peptide-methionine (R)-S-oxide reductase MsrB	-
J5D27_RS01085 (J5D27_01085)	-	230183..231016 (-)	834	WP_001972641.1	sulfite exporter TauE/SafE family protein	-
J5D27_RS01090 (J5D27_01090)	hopM	231226..233307 (-)	2082	WP_249936582.1	Hop family outer membrane protein HopM/HopN	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 49548.59 Da
• Isoelectric Point: 7.8131

>NTDB_id=480193 J5D27_RS01075 WP_002205897.1 227230..228576(+) (radA/sms) [Helicobacter pylori strain MT5111]
MAKKTSLFECQHCGFTSPKWLGKCVQCNAWESFIELNQAQKEVLHALKKPLPQAQKSVSIAEIEHEEVIKFSSTQSELDI
VLGGGIAKGGLYLVGGSPGVGKSTLLLKVASGLAKNQQKVLYVSGEESLSQIKMRATRLDCIEKELYLLNEINWPVIKAN
MESENYFACVIDSIQTLYSPEISSAPGSISQVREITFELMRLAKTRDIAIFIIGHITKEGSIAGPRVLEHMVDSVLYFEG
DPSRELRILRSFKNRFGPTSEIGLFEMKEQGLVSAKEASSLFFSKEEPMEGSAITITLEGSRALILEIQALVSECSFGVP
KRLANGFDTNRLNMLIALLEKKLEIPLNRHDVFINVSGGIKISEPACDLAVIASILSSFKNRKIDNKTAFLGEVSLNGRI
LEAPNLNARLKEMENYGFLKAILPKKPSQKTSIKCYEANVVGKIVEWM

Nucleotide

• Length: 1347 bp

>NTDB_id=480193 J5D27_RS01075 WP_002205897.1 227230..228576(+) (radA/sms) [Helicobacter pylori strain MT5111]
ATGGCTAAAAAAACTTCTTTATTTGAGTGTCAGCATTGCGGTTTTACAAGCCCTAAGTGGCTAGGAAAGTGCGTTCAGTG
CAACGCATGGGAGAGTTTTATAGAATTGAACCAAGCCCAAAAGGAAGTTTTACACGCGCTTAAAAAACCGCTCCCACAAG
CGCAAAAAAGCGTTTCTATCGCTGAAATTGAACATGAAGAAGTCATCAAGTTTTCTTCCACTCAAAGCGAGTTGGATATT
GTTTTAGGTGGGGGGATCGCTAAAGGGGGGCTGTATTTAGTGGGGGGGAGTCCTGGGGTAGGGAAATCCACTCTGCTTTT
AAAAGTGGCTTCTGGCTTGGCCAAAAACCAGCAAAAGGTTTTGTACGTGAGCGGGGAAGAGAGCTTGAGCCAGATTAAAA
TGCGCGCCACCAGATTAGATTGCATAGAAAAAGAATTGTATTTGCTCAATGAAATCAATTGGCCTGTGATAAAAGCTAAT
ATGGAAAGCGAAAATTATTTTGCTTGCGTGATTGATTCCATTCAAACGCTTTATTCGCCAGAGATTTCTTCAGCCCCCGG
CTCTATTTCGCAAGTGCGAGAGATCACTTTTGAGCTCATGCGTTTGGCCAAAACAAGAGATATTGCTATTTTTATCATCG
GTCATATCACTAAAGAAGGGAGCATCGCAGGGCCTAGGGTGCTAGAGCATATGGTAGATAGCGTGCTGTATTTTGAGGGC
GATCCCAGTAGGGAATTAAGGATTTTAAGGAGTTTTAAAAACCGCTTTGGCCCTACGAGTGAAATCGGCTTGTTTGAGAT
GAAAGAGCAGGGTTTGGTGAGTGCTAAAGAGGCGTCAAGCTTGTTTTTTTCCAAAGAAGAGCCTATGGAAGGGAGCGCGA
TTACCATCACTTTAGAAGGATCAAGGGCGTTGATTTTAGAGATTCAGGCGTTGGTGAGCGAGTGCAGTTTCGGGGTGCCC
AAACGATTAGCGAACGGGTTTGACACTAACCGCCTTAACATGCTCATCGCTTTGTTAGAAAAAAAGCTAGAAATCCCTTT
AAACCGCCATGATGTGTTCATTAATGTGAGCGGAGGCATTAAGATTAGCGAGCCGGCTTGCGATTTAGCGGTCATTGCCA
GTATCCTTTCAAGCTTTAAAAACAGAAAAATTGACAATAAAACGGCGTTTTTGGGCGAAGTGAGTTTGAATGGCAGGATT
TTAGAAGCCCCTAATTTGAACGCCAGATTGAAAGAAATGGAAAATTACGGCTTTTTAAAAGCCATTTTGCCCAAAAAACC
CAGTCAAAAAACCTCTATCAAATGCTATGAAGCCAATGTGGTGGGTAAGATTGTTGAGTGGATGTGA

Domains

Predicted by InterProScan.

• Subunit ChlI of Mg-chelatase (ChlI) (344-426)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (62-220)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA/sms	Bacillus subtilis subsp. subtilis str. 168	47.073	95.313	0.449
radA	Streptococcus pneumoniae Rx1	46.714	95.089	0.444
radA	Streptococcus pneumoniae D39	46.714	95.089	0.444
radA	Streptococcus pneumoniae R6	46.714	95.089	0.444
radA	Streptococcus pneumoniae TIGR4	46.714	95.089	0.444
radA	Streptococcus mitis SK321	46.714	95.089	0.444
radA	Streptococcus mitis NCTC 12261	46.479	95.089	0.442