Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   J5D24_RS05915 Genome accession   NZ_CP071978
Coordinates   1275581..1276630 (+) Length   349 a.a.
NCBI ID   WP_097706991.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5125     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1270581..1281630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D24_RS05900 (J5D24_05900) - 1271607..1272752 (-) 1146 WP_209507742.1 DUF874 family protein -
  J5D24_RS05905 (J5D24_05905) asd 1273164..1274204 (-) 1041 WP_209507744.1 aspartate-semialdehyde dehydrogenase -
  J5D24_RS05910 (J5D24_05910) hisS 1274191..1275519 (-) 1329 WP_097706990.1 histidine--tRNA ligase -
  J5D24_RS05915 (J5D24_05915) waaF 1275581..1276630 (+) 1050 WP_097706991.1 lipopolysaccharide heptosyltransferase II Regulator
  J5D24_RS05920 (J5D24_05920) - 1276764..1277090 (-) 327 WP_000744162.1 hypothetical protein -
  J5D24_RS08395 - 1277190..1277383 (+) 194 Protein_1165 hypothetical protein -
  J5D24_RS05925 (J5D24_05925) fusA 1277645..1279723 (-) 2079 WP_000101858.1 elongation factor G -
  J5D24_RS05930 (J5D24_05930) rpsG 1279735..1280202 (-) 468 WP_001254355.1 30S ribosomal protein S7 -
  J5D24_RS05935 (J5D24_05935) rpsL 1280218..1280625 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39524.24 Da        Isoelectric Point: 9.8019

>NTDB_id=480175 J5D24_RS05915 WP_097706991.1 1275581..1276630(+) (waaF) [Helicobacter pylori strain MT5125]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPTITCELFKKDEKIEAVFTDDTKRSFFRLLATYKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAITAAPKEYHQVEKYCFLFSQFLEKELDQKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVAAALLEKGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLSH
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVATSTKTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLQAARTLLEKS

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=480175 J5D24_RS05915 WP_097706991.1 1275581..1276630(+) (waaF) [Helicobacter pylori strain MT5125]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGCTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCAACCATTACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTACAGATGACACCAAAAGATCCTTTTTCAGGCTATTAGCCACTTACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACCTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTGTTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTGTTTCTCAGCCATGCGATAACTGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAGAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAATTAGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCGGCTTCTTATTACGCTGAAGTTGCGGCTGCTTTGTTGGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTGTTAAAAAACCCCTTATTATCCCAC
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTAGCCACTAGCACGAAAACCCCCCTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATTGTGTTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCCATCACGCCCCTTGAAGTCCTTCAAGCCGCTCGCACTCTTTTAGA
AAAGTCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

36.994

99.14

0.367