Detailed information NTG0480168

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: J5D24_RS04870
• Genome accession: NZ_CP071978
• Coordinates: 1045783..1047018 (+)
• Length: 411 a.a.
• NCBI ID: WP_097707777.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5125
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1040783..1052018

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5D24_RS04855 (J5D24_04855)	-	1041202..1043135 (+)	1934	Protein_960	type IA DNA topoisomerase	-
J5D24_RS04860 (J5D24_04860)	-	1043265..1044251 (+)	987	WP_097707769.1	virB8 family protein	-
J5D24_RS04865 (J5D24_04865)	-	1044251..1045786 (+)	1536	WP_097707773.1	TrbG/VirB9 family P-type conjugative transfer protein	-
J5D24_RS04870 (J5D24_04870)	comB10	1045783..1047018 (+)	1236	WP_097707777.1	DNA type IV secretion system protein ComB10	Machinery gene
J5D24_RS04875 (J5D24_04875)	-	1047103..1047399 (+)	297	WP_097707780.1	hypothetical protein	-
J5D24_RS04880 (J5D24_04880)	-	1047449..1047652 (+)	204	WP_241894628.1	hypothetical protein	-
J5D24_RS04885 (J5D24_04885)	-	1047649..1047948 (+)	300	WP_097707782.1	hypothetical protein	-
J5D24_RS04890 (J5D24_04890)	-	1047948..1048889 (+)	942	WP_097707785.1	ATPase, T2SS/T4P/T4SS family	-
J5D24_RS04895 (J5D24_04895)	-	1048886..1049341 (+)	456	WP_097707787.1	mobilization protein	-
J5D24_RS04900 (J5D24_04900)	-	1049338..1049628 (+)	291	WP_000180695.1	hypothetical protein	-
J5D24_RS08155	-	1049629..1050185 (+)	557	Protein_970	hypothetical protein	-
J5D24_RS04910 (J5D24_04910)	-	1050186..1051934 (+)	1749	WP_198994736.1	type IV secretory system conjugative DNA transfer family protein	-

Sequence

Protein

• Length: 411 a.a.
• Molecular weight: 46511.67 Da
• Isoelectric Point: 10.1056

>NTDB_id=480168 J5D24_RS04870 WP_097707777.1 1045783..1047018(+) (comB10) [Helicobacter pylori strain MT5125]
MKKLLLLLEHKIVKIGLIIVIVLVGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINQVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDFNKTLIKPQSPSFNYNTANEEEKTRLVILASRISSQKETQSPISVKNSVSNIKSK
EKRELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGVDVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKRGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK

Nucleotide

• Length: 1236 bp

>NTDB_id=480168 J5D24_RS04870 WP_097707777.1 1045783..1047018(+) (comB10) [Helicobacter pylori strain MT5125]
ATGAAAAAACTTCTTTTACTCTTAGAGCATAAGATCGTAAAAATTGGATTAATTATTGTGATTGTGTTAGTGGGTTTTTT
TCTTTTTTATGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCCACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAAAATAAAATAGATACCATCAATCAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGCGCTAGTGCAAAAATTACCAAATTTGCCTAAGGACTTTAA
TAAAACACTTATTAAACCACAAAGTCCATCCTTCAACTACAATACCGCTAACGAAGAAGAAAAAACCCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGCCAAAAAGAAACGCAATCTCCCATTTCTGTGAAAAATAGCGTTTCTAACATAAAATCTAAA
GAAAAACGAGAGCTTGAAAAAGAATACGGCTCTAGCGGGTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTAAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGCAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGCGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGCTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAACAGGATCATCACGCCACAAGG
GGTTAATATTATTTTAAGCGATGCTAAGGGAGTTGATGTTAAGGGCTATAACGGCATGATAGGCACGCTCCATAACAAAT
ATTGGGAACGCTATGGTATCCCCTTATCCTTAAGCACTTTGTCAAACGGGTTACTCATAGGACTTACTAGCGGTCTTACT
GAAGCGATGAAAAACAAAAGAGGCGGTTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACAAGACAAAC
TGGTATCAGCCTGAATAACATTATCGCTCAAATCATGCGAGAGCAAATCAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCAAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (192-387)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	46.482	96.837	0.45