Detailed information NTG0480161

Bioinformatically predicted

Overview

• Name: uvrA
• Type: Machinery gene
• Locus tag: J5D24_RS03480
• Genome accession: NZ_CP071978
• Coordinates: 744170..746995 (-)
• Length: 941 a.a.
• NCBI ID: WP_198994708.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5125
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 739170..751995

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5D24_RS03465 (J5D24_03465)	gyrA	739422..741908 (+)	2487	WP_209508171.1	DNA topoisomerase (ATP-hydrolyzing) subunit A	-
J5D24_RS03470 (J5D24_03470)	-	741908..742381 (+)	474	WP_001895664.1	hypothetical protein	-
J5D24_RS03475 (J5D24_03475)	flgR	742378..743523 (+)	1146	WP_097707236.1	transcriptional activator FlgR	-
J5D24_RS03480 (J5D24_03480)	uvrA	744170..746995 (-)	2826	WP_198994708.1	excinuclease ABC subunit UvrA	Machinery gene
J5D24_RS03485 (J5D24_03485)	hopE	747160..747981 (+)	822	WP_000395382.1	Hop family outer membrane protein HopE	-
J5D24_RS03490 (J5D24_03490)	rsmH	748154..749080 (+)	927	WP_097707237.1	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	-
J5D24_RS03495 (J5D24_03495)	-	749101..749445 (+)	345	WP_097707238.1	hypothetical protein	-
J5D24_RS03500 (J5D24_03500)	-	749906..750808 (+)	903	WP_097707240.1	S-adenosyl-l-methionine hydroxide adenosyltransferase family protein	-

Sequence

Protein

• Length: 941 a.a.
• Molecular weight: 104735.52 Da
• Isoelectric Point: 7.7365

>NTDB_id=480161 J5D24_RS03480 WP_198994708.1 744170..746995(-) (uvrA) [Helicobacter pylori strain MT5125]
MQHKTIMDKIIIQGARENNLKNIFLEIPKNQFVVFTGLSGSGKSTLAFDTLYAEGQRRYLESLSSYARQFLDKVGKPNVD
KIEGLTPAIAIDQKTTSKNPRSTVGTITEIYDYLRLLFARVGEQFCPTCLEPISSMSASDIISQICHLEENSKIIILAPI
IKDKKGSFNDKLESLRLKGYVRAFVDGVMVRLDEEIHLHKTKKHTIEAVVDRVVINSENSSRIASAVEKALKESYGELEV
EILQDNAPSIRKHYSEHKACFKCKMSFEELEPLSFSFNSPKGACESCLGLGTKFSLDISKILDPNTPLNQGAIKVIFGYN
RSYYAQMFEGFCEYNGIDTVLCFNELNKEQQDALLYGNGTEISFHFKNSPLKRPWKGIIQIAYDMFKEQKDLSDYMSEKT
CSSCNGHRLKASSLSVQVAGLKMADFLTKPIEEVYHFFNDPTHFSYLNEQEKKIAEPILKEILERVFFLYDVGLGYLTLG
RDARTISGGESQRIRIASQIGSGLTGVLYVLDEPSIGLHEKDTLKLINTLRNLQKKGNTLIVVEHDKETIKHADFVVDIG
PKAGRHGGEVVFSGSVKDLLQNNHSTALYLNGTKKIERPKFEPPKEKHFLEIKNVNINNIKNLSVQIPLKQLVCITGVSG
SGKSSLILQTLLPTAQTLLNHAKKAQSLNGVEIVGLEHLDKVIYLDQAPIGKTPRSNPATYTGVMDEIRILFAEQKEAKI
LGYSASRFSFNVKGGRCEKCQGDGDIKIEMHFLPDVLVQCDSCKGAKYNPQTLEIKVKGKSIADVLNMSVEEAYEFFAKF
PKIAVKLKTLIDVGLGYITLGQNATTLSGGEAQRIKLAKELSKKDTGKTLYILDEPTTGLHFEDVNHLLQVLHSLVALGN
SMLVIEHNLDIIKNADYIIDMGPDGGDKGGRVIASGTPLEVAQNCEKTQSYTGKFLALELK

Nucleotide

• Length: 2826 bp

>NTDB_id=480161 J5D24_RS03480 WP_198994708.1 744170..746995(-) (uvrA) [Helicobacter pylori strain MT5125]
TTGCAACATAAAACCATTATGGATAAGATCATTATTCAAGGGGCTAGGGAAAACAATCTCAAAAATATCTTTTTAGAAAT
CCCTAAAAACCAATTTGTTGTTTTTACCGGATTAAGCGGTTCGGGTAAATCCACTCTGGCGTTTGACACTTTATACGCTG
AAGGCCAAAGGCGTTATTTAGAGAGTTTGTCTAGTTATGCGAGGCAATTTTTAGACAAAGTGGGTAAGCCTAATGTGGAT
AAGATTGAAGGCCTAACTCCTGCGATCGCTATTGATCAAAAAACCACTTCTAAAAACCCTAGATCCACTGTGGGGACGAT
CACTGAGATTTATGATTATTTAAGGTTGTTGTTTGCAAGGGTTGGGGAGCAATTTTGCCCCACATGTTTAGAGCCTATTA
GTTCTATGAGCGCGAGCGATATCATTTCTCAAATCTGTCATTTAGAAGAAAATTCTAAAATCATTATTCTCGCCCCCATT
ATTAAAGATAAAAAAGGCTCGTTTAACGATAAATTAGAGAGCTTGCGTTTGAAGGGGTATGTGAGGGCTTTTGTTGATGG
GGTGATGGTGCGTTTAGATGAAGAAATCCATTTGCACAAAACCAAAAAACACACCATTGAAGCGGTGGTGGATAGGGTGG
TTATCAATAGCGAAAATTCTTCACGGATCGCTAGTGCGGTAGAAAAAGCCCTTAAAGAAAGCTATGGGGAATTAGAAGTG
GAAATCTTGCAAGACAACGCGCCAAGCATTAGGAAGCATTACAGCGAGCATAAGGCATGTTTTAAGTGTAAGATGAGTTT
TGAAGAATTAGAGCCTTTGAGTTTTTCCTTCAATTCGCCTAAAGGGGCGTGCGAGAGCTGTTTGGGTTTGGGGACAAAAT
TTAGCTTAGATATTAGTAAGATTTTAGATCCTAACACGCCTTTAAATCAAGGAGCGATTAAAGTCATTTTTGGGTATAAC
CGCAGTTATTACGCTCAAATGTTTGAAGGCTTTTGCGAATACAATGGCATTGACACTGTGCTTTGTTTCAACGAGTTGAA
TAAAGAGCAACAAGACGCTCTTTTGTATGGGAATGGCACTGAAATCAGCTTTCATTTTAAAAACAGCCCCTTGAAACGCC
CCTGGAAAGGCATTATCCAAATCGCTTATGACATGTTTAAAGAGCAAAAGGATTTGAGCGATTACATGAGCGAAAAAACC
TGTTCTTCGTGTAATGGGCATCGTTTGAAAGCTTCAAGTTTGAGCGTCCAAGTCGCTGGCTTGAAAATGGCGGATTTTTT
AACTAAGCCCATTGAAGAAGTCTATCATTTTTTTAATGATCCCACGCATTTTAGCTATCTTAACGAGCAAGAAAAAAAGA
TTGCTGAACCCATTTTAAAAGAGATTTTAGAAAGGGTGTTTTTTTTATACGATGTGGGGCTAGGGTATTTGACTTTAGGG
AGGGATGCGCGAACGATTAGCGGAGGGGAGAGCCAAAGGATACGAATCGCCAGTCAAATCGGGAGCGGTTTGACAGGGGT
TTTGTATGTTTTAGACGAGCCTAGCATTGGCTTGCATGAAAAGGACACCCTCAAACTCATCAACACCCTTAGAAATTTAC
AAAAAAAGGGGAACACGCTCATTGTCGTAGAGCATGATAAAGAGACGATTAAGCATGCGGATTTTGTTGTGGATATTGGG
CCAAAGGCTGGAAGGCATGGGGGTGAAGTGGTTTTTAGCGGGAGCGTAAAAGATTTATTGCAAAATAACCATTCTACCGC
CTTGTATCTCAACGGCACTAAAAAGATTGAGCGCCCCAAATTTGAACCCCCTAAAGAAAAGCATTTTTTAGAAATTAAAA
ATGTCAATATCAATAACATTAAGAATTTGAGCGTTCAAATCCCTTTAAAACAATTGGTGTGCATTACGGGGGTGAGCGGG
AGCGGTAAAAGCTCGCTGATCTTACAAACCCTTTTACCCACCGCTCAAACCCTTTTAAACCATGCTAAAAAAGCTCAAAG
TTTGAATGGGGTGGAGATTGTAGGGTTGGAGCATTTGGATAAAGTGATTTATTTGGATCAAGCCCCTATAGGCAAAACCC
CACGGAGCAACCCTGCCACTTACACAGGGGTGATGGATGAAATCAGGATTTTATTTGCCGAACAGAAAGAAGCTAAAATT
TTAGGCTATAGCGCGAGCCGTTTTAGCTTTAATGTGAAAGGGGGGCGGTGCGAGAAATGCCAAGGCGATGGGGATATTAA
AATAGAAATGCATTTTTTGCCTGATGTGTTGGTCCAATGCGATAGCTGTAAGGGTGCTAAATACAACCCCCAAACTTTAG
AAATCAAGGTGAAAGGCAAATCCATTGCTGATGTGTTGAACATGAGCGTGGAAGAGGCTTATGAATTTTTTGCTAAATTC
CCTAAAATCGCCGTGAAGTTAAAAACGCTTATAGATGTGGGCTTGGGCTATATCACTTTAGGGCAAAACGCTACCACTTT
AAGCGGGGGGGAGGCTCAAAGGATCAAATTGGCTAAAGAATTGAGTAAAAAAGACACAGGCAAAACCCTTTATATTTTAG
ATGAGCCTACCACCGGTTTGCATTTTGAAGACGTGAATCACCTTTTGCAGGTTTTGCATTCTTTAGTGGCGTTAGGCAAT
TCCATGCTAGTGATTGAGCATAATTTAGACATTATCAAAAACGCTGATTACATTATAGACATGGGGCCTGATGGGGGGGA
TAAGGGTGGGAGAGTCATTGCGAGCGGCACGCCTTTAGAGGTGGCACAAAATTGCGAAAAAACCCAAAGCTACACGGGAA
AATTTTTAGCTTTGGAATTGAAATAG

Domains

Predicted by InterProScan.

• UvrA interaction domain (UvrA_inter) (137-243)

• UvrA DNA-binding domain (UvrA_DNA-bind) (297-390)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
uvrA	Streptococcus pneumoniae R6	50.052	100	0.509
uvrA	Streptococcus pneumoniae TIGR4	50.052	100	0.509
uvrA	Streptococcus pneumoniae D39	50.052	100	0.509