Detailed information NTG0480150

Bioinformatically predicted

Overview

• Name: radA/sms
• Type: Machinery gene
• Locus tag: J5D24_RS01095
• Genome accession: NZ_CP071978
• Coordinates: 227369..228715 (+)
• Length: 448 a.a.
• NCBI ID: WP_209507975.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5125
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 222369..233715

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5D24_RS01065 (J5D24_01065)	-	222522..223352 (+)	831	Protein_207	beta-1,4-N-acetylgalactosamyltransferase	-
J5D24_RS01070 (J5D24_01070)	-	223368..223994 (-)	627	WP_198994721.1	YbhB/YbcL family Raf kinase inhibitor-like protein	-
J5D24_RS01075 (J5D24_01075)	-	224060..224524 (+)	465	WP_097707379.1	helix-turn-helix domain-containing protein	-
J5D24_RS01080 (J5D24_01080)	-	224693..225856 (+)	1164	WP_000941652.1	NifS family cysteine desulfurase	-
J5D24_RS01085 (J5D24_01085)	-	225878..226858 (+)	981	WP_001051955.1	iron-sulfur cluster assembly scaffold protein NifU	-
J5D24_RS01090 (J5D24_01090)	-	227021..227257 (+)	237	WP_000858669.1	ribbon-helix-helix domain-containing protein	-
J5D24_RS01095 (J5D24_01095)	radA/sms	227369..228715 (+)	1347	WP_209507975.1	DNA repair protein RadA	Machinery gene
J5D24_RS01100 (J5D24_01100)	msrB	228839..229918 (+)	1080	WP_000866569.1	peptide-methionine (R)-S-oxide reductase MsrB	-
J5D24_RS01105 (J5D24_01105)	-	230325..231159 (-)	835	Protein_215	sulfite exporter TauE/SafE family protein	-
J5D24_RS01110 (J5D24_01110)	-	231369..233456 (-)	2088	WP_283957953.1	SabA family sialic acid-binding adhesin	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 49565.60 Da
• Isoelectric Point: 8.2153

>NTDB_id=480150 J5D24_RS01095 WP_209507975.1 227369..228715(+) (radA/sms) [Helicobacter pylori strain MT5125]
MAKKTSLFECQHCGFTSPKWLGKCVQCNAWESFIKLNQAQKEVLHAFKKPLPQAQKSVSIAEIEHEEVIKFSSTQSELDI
VLGGGIAKGGLYLVGGSPGVGKSTLLLKVASGLAKNQQKVLYVSGEESLSQIKMRATRLDCIEKELYLLNEINWPVIKAN
IESENYFACVIDSIQTLYSPEISSAPGSISQVREITFELMRLAKTRDIAIFIIGHITKEGSIAGPRVLEHMVDSVLYFEG
DPSRELRILRSFKNRFGPTSEIGLFEMKEQGLVSAKEASSLFFSKEEPMEGSAITITLEGSRALILEIQALVSECSFGTP
KRLANGFDTNRLNMLIALLEKKLEIPLNRHDVFINVSGGIKISEPACDLAVIASILSSFKNRKIDNKTAFLGEVSLNGRI
LEAPNLNARLKEMENYGFLKAILPKKPSQKTSIKCYEANVVGKIVEWM

Nucleotide

• Length: 1347 bp

>NTDB_id=480150 J5D24_RS01095 WP_209507975.1 227369..228715(+) (radA/sms) [Helicobacter pylori strain MT5125]
TTGGCTAAAAAAACTTCTTTATTTGAGTGTCAGCATTGTGGTTTTACAAGCCCTAAATGGCTAGGAAAGTGCGTTCAGTG
CAACGCATGGGAGAGCTTTATAAAATTGAACCAAGCCCAAAAGGAAGTTTTACACGCGTTTAAAAAACCGCTCCCACAAG
CGCAAAAAAGCGTTTCTATCGCTGAAATTGAGCATGAAGAAGTCATCAAGTTTTCTTCCACTCAAAGCGAATTGGATATT
GTCTTAGGTGGGGGGATCGCTAAAGGGGGGTTGTATTTAGTGGGGGGGAGTCCTGGGGTGGGGAAATCCACTCTGCTTTT
AAAAGTGGCTTCTGGCTTGGCCAAAAACCAGCAAAAGGTTTTGTATGTGAGCGGGGAAGAGAGCTTGAGCCAGATTAAAA
TGCGCGCCACTAGATTGGATTGCATAGAAAAAGAATTGTATCTGCTCAATGAAATCAATTGGCCTGTGATTAAGGCTAAT
ATAGAAAGCGAAAATTATTTTGCTTGCGTGATTGATTCCATTCAAACGCTTTATTCGCCAGAGATTTCTTCAGCCCCCGG
CTCTATTTCGCAAGTGCGAGAGATCACTTTTGAGCTCATGCGTTTGGCCAAAACAAGAGATATTGCTATTTTTATCATCG
GCCATATCACTAAAGAAGGGAGCATCGCAGGGCCTAGAGTGCTAGAGCATATGGTGGATAGTGTGCTGTATTTTGAAGGC
GATCCCAGTAGGGAACTAAGGATTTTAAGGAGTTTTAAAAACCGCTTTGGCCCTACGAGTGAAATCGGCTTGTTTGAAAT
GAAAGAGCAGGGTTTGGTGAGCGCTAAAGAAGCTTCAAGTTTGTTTTTTTCTAAAGAAGAGCCTATGGAGGGGAGCGCGA
TTACCATCACTTTAGAAGGATCAAGGGCGTTGATTTTAGAGATTCAGGCGTTGGTGAGCGAATGCAGTTTTGGAACACCC
AAACGATTAGCGAACGGGTTTGACACTAACCGCCTTAACATGCTCATCGCTTTATTAGAAAAAAAGCTAGAAATCCCCTT
AAACCGCCATGATGTGTTCATTAATGTGAGCGGAGGCATTAAAATTAGCGAGCCGGCTTGCGATTTAGCGGTCATTGCCA
GTATCCTTTCAAGCTTTAAAAACAGAAAAATTGACAATAAAACGGCGTTTTTGGGCGAAGTGAGTTTGAATGGCAGGATT
TTAGAAGCCCCTAATTTGAACGCCAGATTGAAAGAAATGGAAAATTACGGCTTTTTAAAAGCCATTTTGCCCAAAAAACC
CAGTCAAAAAACTTCTATCAAATGCTATGAAGCTAATGTGGTGGGTAAGATTGTTGAGTGGATGTGA

Domains

Predicted by InterProScan.

• Subunit ChlI of Mg-chelatase (ChlI) (344-426)

• AAA domain (AAA_25) (62-220)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-33)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA/sms	Bacillus subtilis subsp. subtilis str. 168	47.307	95.313	0.451
radA	Streptococcus pneumoniae Rx1	46.714	95.089	0.444
radA	Streptococcus pneumoniae D39	46.714	95.089	0.444
radA	Streptococcus pneumoniae R6	46.714	95.089	0.444
radA	Streptococcus pneumoniae TIGR4	46.714	95.089	0.444
radA	Streptococcus mitis SK321	46.714	95.089	0.444
radA	Streptococcus mitis NCTC 12261	46.479	95.089	0.442