Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   J5D22_RS01075 Genome accession   NZ_CP071977
Coordinates   226721..228067 (+) Length   448 a.a.
NCBI ID   WP_001896724.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 221721..233067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D22_RS01045 (J5D22_01045) - 221836..222660 (+) 825 WP_249936463.1 beta-1,4-N-acetylgalactosamyltransferase -
  J5D22_RS01050 (J5D22_01050) - 222730..223356 (-) 627 WP_209506073.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  J5D22_RS01055 (J5D22_01055) - 223422..223886 (+) 465 WP_001908888.1 helix-turn-helix domain-containing protein -
  J5D22_RS01060 (J5D22_01060) - 224056..225219 (+) 1164 WP_000941654.1 NifS family cysteine desulfurase -
  J5D22_RS01065 (J5D22_01065) - 225241..226221 (+) 981 WP_163497573.1 iron-sulfur cluster assembly scaffold protein -
  J5D22_RS01070 (J5D22_01070) - 226376..226609 (+) 234 WP_000858673.1 ribbon-helix-helix domain-containing protein -
  J5D22_RS01075 (J5D22_01075) radA 226721..228067 (+) 1347 WP_001896724.1 DNA repair protein RadA Machinery gene
  J5D22_RS01080 (J5D22_01080) msrB 228190..229269 (+) 1080 WP_209506075.1 peptide-methionine (R)-S-oxide reductase MsrB -
  J5D22_RS01085 (J5D22_01085) - 229674..230507 (-) 834 WP_001949781.1 sulfite exporter TauE/SafE family protein -
  J5D22_RS01090 (J5D22_01090) hopM 230720..232801 (-) 2082 WP_249936455.1 Hop family outer membrane protein HopM/HopN -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49554.55 Da        Isoelectric Point: 7.8019

>NTDB_id=480109 J5D22_RS01075 WP_001896724.1 226721..228067(+) (radA) [Helicobacter pylori strain MT5105]
MAKKTSLFECQHCGFTSPKWLGKCVQCNAWESFIELNQTQKEVLNALKKPLPQAQKSVSIAEIEHEEVIKFSSTQSELDI
VLGGGIAKGGLYLVGGSPGVGKSTLLLKVASGLAKNQQKVLYVSGEESLSQIKMRATRLDCIEKELYLLNEINWPVIKAN
MESENYFACVIDSIQTLYSPEISSAPGSISQVREITFELMRLAKTRDIAIFIIGHITKEGSIAGPRVLEHMVDSVLYFEG
DPSRELRILRSFKNRFGPTSEIGLFEMKEQGLVSAKEASSLFFSKEEPMEGSAITITLEGSRALILEIQALVSECSFGAP
KRLANGFDTNRLNMLIALLEKKLEIPLNRHDVFINVSGGIKISEPACDLAVIASILSSFKNRKIDNKTAFLGEVSLNGRI
LEAPNLNARLKEMENYGFLKAILPKKPNQKTSIKCYEANVVGKIVEWM

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=480109 J5D22_RS01075 WP_001896724.1 226721..228067(+) (radA) [Helicobacter pylori strain MT5105]
TTGGCTAAAAAAACTTCTTTATTTGAGTGTCAGCATTGCGGTTTTACAAGCCCTAAATGGCTAGGAAAGTGCGTTCAGTG
CAACGCATGGGAGAGTTTTATAGAATTGAACCAAACCCAAAAGGAAGTTTTAAACGCGCTTAAAAAACCGCTCCCACAAG
CGCAAAAAAGCGTTTCTATCGCTGAAATTGAACATGAAGAAGTCATCAAGTTTTCTTCCACTCAAAGCGAGTTGGATATT
GTTTTAGGTGGGGGGATCGCTAAAGGGGGGCTGTATTTAGTGGGGGGGAGTCCTGGGGTGGGGAAATCCACTCTGCTTTT
AAAAGTGGCTTCTGGCTTAGCCAAAAACCAGCAAAAGGTTTTGTATGTGAGCGGGGAAGAGAGCTTGAGCCAGATTAAAA
TGCGCGCCACTAGATTAGATTGCATAGAAAAAGAATTGTATCTGCTTAATGAAATCAATTGGCCTGTGATTAAAGCTAAT
ATGGAAAGCGAAAATTATTTTGCTTGCGTGATTGATTCCATCCAAACGCTTTATTCGCCAGAGATTTCTTCAGCCCCCGG
CTCTATTTCGCAAGTGCGAGAGATTACTTTTGAGCTCATGCGTTTGGCCAAAACAAGAGATATTGCTATTTTTATCATCG
GCCATATCACTAAAGAAGGGAGCATCGCAGGGCCTAGAGTGCTAGAGCATATGGTAGATAGCGTGCTGTATTTTGAGGGC
GATCCCAGTAGGGAATTAAGGATTTTAAGGAGTTTTAAAAACCGCTTTGGCCCTACGAGTGAAATCGGCTTGTTTGAGAT
GAAAGAGCAGGGTTTGGTGAGCGCCAAAGAGGCTTCAAGCTTGTTTTTTTCTAAAGAAGAGCCTATGGAGGGGAGCGCGA
TTACCATCACTTTAGAAGGATCAAGGGCGTTGATTTTAGAAATCCAGGCGTTGGTGAGCGAGTGCAGTTTTGGAGCGCCC
AAACGATTGGCGAACGGGTTTGACACTAACCGCCTTAACATGCTCATCGCTTTGTTAGAAAAAAAGCTAGAAATCCCTTT
AAACCGCCATGATGTGTTCATTAATGTGAGCGGAGGCATTAAAATTAGCGAGCCGGCTTGCGATTTAGCGGTCATTGCCA
GTATCCTTTCAAGCTTTAAAAACAGAAAAATTGACAATAAAACGGCGTTTTTGGGCGAAGTGAGTTTGAATGGCAGGATT
TTAGAAGCCCCTAATTTGAACGCCAGATTGAAAGAAATGGAAAATTACGGCTTTTTAAAAGCCATTTTGCCCAAAAAACC
CAATCAAAAAACTTCTATCAAATGCTATGAAGCCAATGTGGTGGGTAAGATTGTTGAGTGGATGTGA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(344-426)

AAA domain (AAA_25)

(62-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

46.948

95.089

0.446
  radA Streptococcus pneumoniae Rx1

46.948

95.089

0.446
  radA Streptococcus pneumoniae D39

46.948

95.089

0.446
  radA Streptococcus pneumoniae TIGR4

46.948

95.089

0.446
  radA Streptococcus mitis SK321

46.948

95.089

0.446
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.838

95.313

0.446
  radA Streptococcus mitis NCTC 12261

46.714

95.089

0.444