Detailed information NTG0480070

Bioinformatically predicted

Overview

• Name: radA/sms
• Type: Machinery gene
• Locus tag: J4T92_RS01075
• Genome accession: NZ_CP071975
• Coordinates: 225772..227118 (+)
• Length: 448 a.a.
• NCBI ID: WP_209553115.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5118
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 220772..232118

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4T92_RS01050 (J4T92_01050)	-	221781..222332 (-)	552	WP_209553112.1	YbhB/YbcL family Raf kinase inhibitor-like protein	-
J4T92_RS01055 (J4T92_01055)	-	222475..222936 (+)	462	WP_209553113.1	helix-turn-helix domain-containing protein	-
J4T92_RS01060 (J4T92_01060)	-	223106..224269 (+)	1164	WP_000941678.1	NifS family cysteine desulfurase	-
J4T92_RS01065 (J4T92_01065)	-	224291..225271 (+)	981	WP_209553114.1	iron-sulfur cluster assembly scaffold protein	-
J4T92_RS01070 (J4T92_01070)	-	225426..225659 (+)	234	WP_000426584.1	ribbon-helix-helix domain-containing protein	-
J4T92_RS01075 (J4T92_01075)	radA/sms	225772..227118 (+)	1347	WP_209553115.1	DNA repair protein RadA	Machinery gene
J4T92_RS01080 (J4T92_01080)	msrB	227242..228321 (+)	1080	WP_097551679.1	peptide-methionine (R)-S-oxide reductase MsrB	-
J4T92_RS01085 (J4T92_01085)	-	228682..229515 (-)	834	WP_209553116.1	sulfite exporter TauE/SafE family protein	-
J4T92_RS01090 (J4T92_01090)	-	229732..231819 (-)	2088	WP_209553117.1	SabA family sialic acid-binding adhesin	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 49421.43 Da
• Isoelectric Point: 8.0235

>NTDB_id=480070 J4T92_RS01075 WP_209553115.1 225772..227118(+) (radA/sms) [Helicobacter pylori strain MT5118]
MAKKTSLFECQHCGFTSPKWLGKCVQCNAWESFIELNQAQKEVLNALKKPLPQAQKSVSIAAIEHEEVIKFSSTQSELDI
VLGGGIAKGGLYLVGGSPGVGKSTLLLKVASGLAKNQQKVLYVSGEESLSQIKMRATRLDCIEKELYLLNEINWPVIKAN
IESENYFACVIDSIQTLYSPEISSAPGSISQVREITFELMRLAKTRDIAIFIIGHITKEGSIAGPRVLEHMVDSVLYFEG
DPSRELRILRSFKNRFGPTSEIGLFEMKEQGLVSAKEASSLFFSKEEPMEGSAITITLEGSRALILEIQALVSECSFGAP
KRLANGFDTNRLNMLIALLEKKLEIPLNRHDVFINVSGGIKISEPACDLAVIASILSSFKNRKIDNKTAFLGEVSLNGRI
LEAPNLNARLKEMENYGFLKAILPKKPSQKTSIKCYEANVVGKIVEWM

Nucleotide

• Length: 1347 bp

>NTDB_id=480070 J4T92_RS01075 WP_209553115.1 225772..227118(+) (radA/sms) [Helicobacter pylori strain MT5118]
TTGGCTAAAAAAACTTCTTTATTTGAATGTCAGCATTGCGGTTTTACAAGCCCTAAGTGGCTAGGAAAGTGCGTTCAATG
CAACGCATGGGAGAGTTTTATAGAATTGAACCAAGCTCAAAAGGAAGTTTTAAACGCACTTAAAAAACCGCTCCCACAAG
CGCAAAAAAGCGTTTCTATCGCTGCAATTGAGCATGAAGAAGTCATTAAGTTTTCTTCCACTCAAAGCGAGTTGGATATT
GTTTTAGGTGGAGGGATCGCTAAAGGGGGGCTGTATTTAGTGGGGGGGAGTCCTGGGGTGGGGAAATCCACTCTGCTTTT
AAAAGTGGCTTCTGGCTTAGCCAAAAACCAGCAAAAGGTTTTGTATGTGAGCGGGGAAGAGAGCTTGAGCCAGATTAAAA
TGCGCGCCACTAGATTGGATTGCATAGAAAAAGAATTGTATCTGCTCAATGAAATCAATTGGCCTGTGATTAAGGCTAAT
ATAGAAAGCGAAAATTATTTTGCTTGCGTGATTGATTCTATCCAAACGCTTTATTCGCCAGAGATTTCTTCAGCGCCCGG
CTCTATTTCGCAAGTGCGAGAGATCACTTTTGAGCTCATGCGTTTGGCCAAAACAAGAGATATTGCTATTTTTATCATCG
GTCATATCACTAAAGAAGGGAGCATCGCAGGGCCTAGAGTGCTAGAGCATATGGTAGATAGCGTGCTGTATTTTGAAGGC
GATCCCAGTAGGGAATTAAGGATTTTAAGGAGTTTTAAAAACCGCTTTGGCCCTACGAGTGAAATCGGCTTGTTTGAAAT
GAAAGAGCAGGGTTTGGTGAGCGCTAAAGAAGCTTCAAGCTTGTTTTTTTCTAAAGAAGAGCCTATGGAGGGGAGCGCCA
TTACCATTACTTTAGAAGGCTCAAGAGCGTTGATTTTAGAGATTCAGGCGTTGGTGAGCGAGTGCAGTTTTGGAGCGCCC
AAACGATTAGCGAACGGGTTTGACACTAACCGCCTTAACATGCTTATTGCTTTGTTAGAAAAAAAACTAGAAATCCCTTT
AAACCGCCATGATGTGTTCATTAATGTGAGCGGAGGCATTAAGATTAGCGAGCCGGCTTGCGATTTAGCGGTCATTGCCA
GTATCCTTTCAAGCTTTAAAAACAGAAAAATTGACAATAAAACGGCGTTTTTGGGCGAAGTGAGTTTGAATGGCAGGATT
TTAGAAGCCCCTAATTTGAACGCCAGATTGAAAGAAATGGAAAATTACGGCTTTTTAAAAGCCATTTTGCCCAAAAAACC
CAGTCAAAAAACCTCTATCAAATGCTATGAAGCCAATGTGGTGGGTAAGATTGTTGAGTGGATGTGA

Domains

Predicted by InterProScan.

• Subunit ChlI of Mg-chelatase (ChlI) (344-426)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (66-220)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA/sms	Bacillus subtilis subsp. subtilis str. 168	47.307	95.313	0.451
radA	Streptococcus pneumoniae Rx1	46.714	95.089	0.444
radA	Streptococcus pneumoniae D39	46.714	95.089	0.444
radA	Streptococcus pneumoniae R6	46.714	95.089	0.444
radA	Streptococcus pneumoniae TIGR4	46.714	95.089	0.444
radA	Streptococcus mitis SK321	46.714	95.089	0.444
radA	Streptococcus mitis NCTC 12261	46.479	95.089	0.442