Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   J4048_RS20010 Genome accession   NZ_CP071970
Coordinates   4091920..4092714 (-) Length   264 a.a.
NCBI ID   WP_004393110.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain XJ5     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4086920..4097714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4048_RS19990 (J4048_19990) - 4087283..4088290 (-) 1008 WP_208557110.1 ThiF family adenylyltransferase -
  J4048_RS19995 (J4048_19995) - 4088522..4089937 (-) 1416 WP_208557111.1 HAMP domain-containing sensor histidine kinase -
  J4048_RS22520 (J4048_20000) - 4089934..4090146 (-) 213 WP_101562600.1 winged helix-turn-helix domain-containing protein -
  J4048_RS20005 (J4048_20005) htrA 4090637..4091833 (-) 1197 WP_007614967.1 S1C family serine protease Regulator
  J4048_RS20010 (J4048_20010) vicX 4091920..4092714 (-) 795 WP_004393110.1 MBL fold metallo-hydrolase Regulator
  J4048_RS20015 (J4048_20015) yycI 4092729..4093568 (-) 840 WP_004393108.1 two-component system regulatory protein YycI -
  J4048_RS20020 (J4048_20020) yycH 4093555..4094913 (-) 1359 WP_004393107.1 two-component system activity regulator YycH -
  J4048_RS20025 (J4048_20025) walK 4094903..4096738 (-) 1836 WP_004393106.1 cell wall metabolism sensor histidine kinase WalK -
  J4048_RS20030 (J4048_20030) walR 4096745..4097452 (-) 708 WP_004393104.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29144.22 Da        Isoelectric Point: 6.0280

>NTDB_id=480053 J4048_RS20010 WP_004393110.1 4091920..4092714(-) (vicX) [Bacillus amyloliquefaciens strain XJ5]
MGLQFSVLASGSTGNAFYLETEEHSFLVDAGLSGKAMDGLMERIGRKIDDVDGIFVTHEHSDHIKGLGVIARKYGLPVYA
NEKTWKAMENQIGKLDTGQKFLFPMESVKSFGGLDVESFGVSHDAAEPMFYVFHYQGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDGTSRIYLAHLSQDNNMKELARMSVQQTLAAK
GFVAGETFQLFDTDPKIPTPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=480053 J4048_RS20010 WP_004393110.1 4091920..4092714(-) (vicX) [Bacillus amyloliquefaciens strain XJ5]
ATGGGCTTGCAATTTAGCGTGCTTGCGAGCGGGAGTACCGGAAACGCGTTTTATCTGGAGACAGAGGAGCACTCTTTTCT
GGTGGATGCCGGCCTGAGCGGTAAAGCGATGGACGGGCTGATGGAGAGAATCGGCCGTAAGATAGACGACGTCGACGGCA
TCTTTGTCACTCACGAGCACAGCGACCATATTAAAGGGCTCGGCGTCATTGCGAGAAAGTACGGTCTACCCGTCTACGCC
AATGAAAAGACGTGGAAAGCGATGGAGAATCAGATCGGCAAGCTGGATACCGGACAAAAGTTTTTGTTCCCGATGGAAAG
CGTGAAATCTTTCGGCGGGCTTGATGTTGAGTCATTCGGCGTCTCTCATGACGCGGCCGAGCCGATGTTTTACGTTTTCC
ACTACCAAGGCAGAAAGCTCGCGCTGATGACGGACACCGGATATGTGAGCGACAGAATGAAAGGCATCATCCGTTCGGCC
AATGTGTTTGTGTTTGAAAGCAACCATGACGTCGGCATGCTGCAAATGGGCAGATACCCTTGGAGCATTAAGCGGCGGAT
TTTAAGCGATGTCGGCCACGTCTCGAATGAAGATGCGGCGCTCGCCATGACTGATGTCATCGGCGACGGCACATCGCGCA
TCTATTTGGCGCATCTGAGCCAAGACAACAATATGAAGGAACTGGCGAGAATGTCCGTGCAGCAGACATTGGCTGCGAAA
GGATTTGTCGCCGGGGAAACGTTTCAGTTATTTGATACCGATCCGAAAATTCCGACGCCGCTGTGCGCCGTGTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

52.852

99.621

0.527