Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   NMBM04240196_RS05455 Genome accession   NC_017515
Coordinates   1081671..1083416 (+) Length   581 a.a.
NCBI ID   WP_002222425.1    Uniprot ID   -
Organism   Neisseria meningitidis M04-240196     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1076671..1088416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM04240196_RS05430 (NMBM04240196_0966) - 1076907..1078445 (+) 1539 WP_002227307.1 SurA N-terminal domain-containing protein -
  NMBM04240196_RS05435 (NMBM04240196_0967) recR 1078512..1079129 (+) 618 WP_002217147.1 recombination mediator RecR -
  NMBM04240196_RS05440 (NMBM04240196_0968) - 1079185..1079463 (-) 279 WP_002213502.1 hypothetical protein -
  NMBM04240196_RS05445 (NMBM04240196_0969) - 1079668..1080915 (+) 1248 WP_002217148.1 lipoprotein-releasing ABC transporter permease subunit -
  NMBM04240196_RS05450 (NMBM04240196_0970) lolD 1080908..1081603 (+) 696 WP_002222424.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  NMBM04240196_RS05455 (NMBM04240196_0971) recD 1081671..1083416 (+) 1746 WP_002222425.1 exodeoxyribonuclease V subunit alpha Machinery gene
  NMBM04240196_RS05460 (NMBM04240196_0972) - 1083444..1084547 (-) 1104 WP_002227308.1 class I SAM-dependent methyltransferase -
  NMBM04240196_RS12555 - 1084522..1084698 (-) 177 WP_226893060.1 nitric oxide synthase -
  NMBM04240196_RS05465 (NMBM04240196_0973) lon 1084798..1087248 (+) 2451 WP_002227310.1 endopeptidase La -
  NMBM04240196_RS05470 (NMBM04240196_0974) - 1087430..1087699 (+) 270 WP_002213508.1 HU family DNA-binding protein -
  NMBM04240196_RS05475 (NMBM04240196_0975) - 1087758..1088192 (-) 435 WP_002220974.1 hypothetical protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 62853.43 Da        Isoelectric Point: 5.7692

>NTDB_id=48005 NMBM04240196_RS05455 WP_002222425.1 1081671..1083416(+) (recD) [Neisseria meningitidis M04-240196]
MERQTDEFAQAAARAAIWFLARYAGSGDEVLANCTERLFQALQNGHSFIRLSGGEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAADTSAPDAAGARQNLAKWFQGTGSEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLA
LICGEDENLPNIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLRPPKMQAAFNPVYPLPFDVL
VIDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSHVRRKMNIPEHQAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSAAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGEEAFRQAA
ATVKTRQTALGSMLERVFSQG

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=48005 NMBM04240196_RS05455 WP_002222425.1 1081671..1083416(+) (recD) [Neisseria meningitidis M04-240196]
ATGGAACGGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCTGGTTTTTGGCACGCTATGCGGGTTCCGG
CGACGAAGTGCTTGCAAACTGCACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGTG
GCGAGGCTGACGCGCTGTCGGCACTCGCACCCGTTGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAGATAAAACGCTTGGCGGCAGCCGACACGTCCGCCCC
CGACGCGGCAGGCGCGAGGCAAAACCTCGCAAAATGGTTTCAAGGCACGGGCAGCGAAGGGCAGCGCGATGCCGCCGCCT
TGGCACTGTTGCAGTCTTTTATGGTGATTACCGGCGGACCCGGGACGGGTAAAACGACGACGGTTGCCAAACTGCTGGCG
CTGATTTGCGGTGAAGACGAAAATCTTCCCAACATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTGAAGCTGCGCCCGCCCAAAATGCAGGCGGCGTTCAACCCTGTTTACCCGCTGCCGTTTGACGTATTG
GTTATCGATGAAGCCTCTATGCTGGATACGGCATTGATGCTGCAACTTTTAAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGGGATGAAAACCAGCTCCCGTCCGTCGGAATAGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGCTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAGGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGAG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTCGTCCTCGCGGCGTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCCATGTACGCCGCAA
AATGAACATACCGGAACATCAGGCCTATTTCGCCGGAGAACCGATTATGATCAGACAGAACGACTACGCGCTTGAACTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGCCGCACCTTCGGACGAAGGGGACGATGCATTGTCTGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCGAGAGAGAAGTTCGTATTCTTCGGCGGGGAAGAAGCCTTCCGGCAAGCTGCC
GCCACCGTCAAAACGCGTCAGACGGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(125-290)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(494-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

95.172

99.828

0.95

Multiple sequence alignment