Detailed information NTG0480044

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: J4048_RS18320
• Genome accession: NZ_CP071970
• Coordinates: 3747089..3748219 (-)
• Length: 376 a.a.
• NCBI ID: WP_033574399.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain XJ5
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3742089..3753219

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4048_RS18290 (J4048_18290)	-	3742933..3743337 (-)	405	WP_003151203.1	Rrf2 family transcriptional regulator	-
J4048_RS18295 (J4048_18295)	ureC	3743479..3745188 (-)	1710	WP_033574400.1	urease subunit alpha	-
J4048_RS18300 (J4048_18300)	ureB	3745185..3745559 (-)	375	WP_012118652.1	urease subunit beta	-
J4048_RS18305 (J4048_18305)	ureA	3745556..3745873 (-)	318	WP_007407581.1	urease subunit gamma	-
J4048_RS18310 (J4048_18310)	-	3746227..3746415 (-)	189	WP_015418407.1	CsbD family protein	-
J4048_RS18315 (J4048_18315)	-	3746489..3746968 (-)	480	WP_025285407.1	hypothetical protein	-
J4048_RS18320 (J4048_18320)	rapC	3747089..3748219 (-)	1131	WP_033574399.1	tetratricopeptide repeat protein	Regulator
J4048_RS18325 (J4048_18325)	moaA	3748410..3749435 (-)	1026	WP_062623579.1	GTP 3',8-cyclase MoaA	-
J4048_RS18330 (J4048_18330)	fdhD	3749453..3750241 (-)	789	WP_033574398.1	formate dehydrogenase accessory sulfurtransferase FdhD	-
J4048_RS18335 (J4048_18335)	-	3750336..3750500 (-)	165	WP_007407587.1	hypothetical protein	-
J4048_RS18340 (J4048_18340)	-	3750586..3751266 (-)	681	WP_033574397.1	VWA domain-containing protein	-
J4048_RS18345 (J4048_18345)	-	3751575..3752261 (-)	687	WP_015418411.1	VWA domain-containing protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44934.07 Da
• Isoelectric Point: 5.4431

>NTDB_id=480044 J4048_RS18320 WP_033574399.1 3747089..3748219(-) (rapC) [Bacillus amyloliquefaciens strain XJ5]
MTAYEIPSSQVGVKINKWYKHILAFQAADAIKLKEEIDEDIKRMEEDQLLLLYYQLISYRHHIMLDYVKPECTEQSQIQY
SELQKTIESTDSISGLSEYYFHLFRGMYEFDHNNYVAAISFYRKAEKLLSFVEDDIERAEFHFKMSEVFYVMKQTHFSMN
HGIQALDTYMKHDFYRVRRIQCHFVISGNYIDCKNYDKALEHLDEALRLSLLEGQPRLIGSSLYNLGNCYSEKRDLDEAA
RYFRKAVPVFEEHQLEQLPKALFSLTHTLFRLHDDQAALTYYERGVMIAKERGDRFSLEKYKFLQALYLESLNMDLIHEV
FDYMNEKSLYVYIEDFALEAAVYTSAHEQYKEAAYFYEKAIRMRENIQKEQCLYDI

Nucleotide

• Length: 1131 bp

>NTDB_id=480044 J4048_RS18320 WP_033574399.1 3747089..3748219(-) (rapC) [Bacillus amyloliquefaciens strain XJ5]
ATGACCGCATACGAGATTCCGTCATCTCAAGTTGGAGTCAAGATCAACAAATGGTACAAGCACATTTTAGCGTTTCAAGC
GGCTGATGCCATAAAGCTGAAAGAGGAAATTGATGAGGATATAAAACGTATGGAGGAAGACCAGCTGCTGCTGTTATATT
ATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTACGTCAAGCCGGAATGCACCGAACAATCACAGATTCAGTAC
AGCGAGCTGCAAAAGACGATCGAAAGCACGGACAGCATATCGGGACTGTCTGAGTATTATTTCCATTTGTTCAGAGGGAT
GTATGAATTCGATCACAATAACTATGTTGCGGCTATTTCTTTTTACAGGAAAGCGGAAAAACTCCTTTCATTTGTCGAGG
ATGATATAGAGAGGGCGGAATTCCATTTCAAGATGTCTGAAGTGTTTTACGTCATGAAGCAGACTCATTTTTCCATGAAT
CACGGGATTCAAGCGCTGGATACGTATATGAAACACGATTTCTACAGAGTGCGGAGAATTCAATGCCATTTCGTCATCTC
AGGAAACTACATCGACTGCAAAAACTACGACAAAGCGCTTGAGCATTTAGACGAAGCCCTCCGCCTTTCTTTGCTTGAAG
GACAGCCCCGCCTGATCGGGTCTTCGCTTTACAATCTGGGGAATTGTTATTCTGAAAAGCGGGATCTGGATGAAGCGGCC
CGGTACTTTAGAAAAGCGGTTCCCGTTTTTGAAGAGCATCAGCTTGAACAGCTTCCGAAGGCGCTGTTCAGCTTAACGCA
CACCCTTTTCAGGCTGCATGATGACCAAGCGGCCCTTACCTATTATGAAAGAGGGGTCATGATCGCGAAAGAACGGGGCG
ATCGATTCAGTTTAGAGAAGTATAAGTTTTTACAAGCGCTTTATTTGGAGTCGCTCAATATGGATTTAATCCATGAAGTG
TTTGACTATATGAATGAAAAATCGCTGTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCGTTTACACAAGCGCACA
TGAGCAATATAAAGAAGCGGCGTATTTTTATGAAAAAGCGATTCGCATGAGAGAAAACATTCAAAAAGAACAGTGTTTAT
ACGATATATAA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Tetratricopeptide repeat (TPR_12) (192-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	42.105	100	0.426
rapF	Bacillus subtilis subsp. subtilis str. 168	40	99.734	0.399