Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimV   Type   Machinery gene
Locus tag   EBO27_RS09305 Genome accession   NZ_CP061034
Coordinates   1985756..1988503 (+) Length   915 a.a.
NCBI ID   WP_057387035.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1980756..1993503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EBO27_RS09285 (EBO27_09285) - 1981391..1982152 (+) 762 WP_003452681.1 class I SAM-dependent methyltransferase -
  EBO27_RS09290 (EBO27_09290) leuB 1982211..1983293 (+) 1083 WP_003091395.1 3-isopropylmalate dehydrogenase -
  EBO27_RS09295 (EBO27_09295) asd 1983363..1984475 (+) 1113 WP_003111187.1 aspartate-semialdehyde dehydrogenase -
  EBO27_RS09300 (EBO27_09300) - 1984577..1985587 (+) 1011 WP_003115016.1 aspartate-semialdehyde dehydrogenase -
  EBO27_RS09305 (EBO27_09305) fimV 1985756..1988503 (+) 2748 WP_057387035.1 motility hub landmark protein FimV Machinery gene
  EBO27_RS09310 (EBO27_09310) truA 1988525..1989382 (+) 858 WP_003091390.1 tRNA pseudouridine(38-40) synthase TruA -
  EBO27_RS09315 (EBO27_09315) - 1989472..1990107 (+) 636 WP_003104200.1 phosphoribosylanthranilate isomerase -
  EBO27_RS09320 (EBO27_09320) accD 1990376..1991248 (+) 873 WP_003104199.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  EBO27_RS09325 (EBO27_09325) folC 1991245..1992534 (+) 1290 WP_003115014.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  EBO27_RS09330 (EBO27_09330) - 1992538..1993197 (+) 660 WP_033956831.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 915 a.a.        Molecular weight: 96592.78 Da        Isoelectric Point: 3.9481

>NTDB_id=479942 EBO27_RS09305 WP_057387035.1 1985756..1988503(+) (fimV) [Pseudomonas aeruginosa strain PA3]
MVRLRTLVRAIAAASVLTSGMAHGLGLGEITLKSALNQPLDAEIELLEVRDLGSGEVIPSLASPEEFSKAGVDRLYYLTD
LKFTPVVKPNGKSVIRVTSSKPVQEPYLNFLVQVLWPNGRLLREYTVLLDPPLYSPQAAASAPQAPVSAPRATGAPRAPQ
APAPVRTTAPAGSDTYRTVSNDTLWEIAQRNRTDRVSVPQAMLAFQELNPGAFVDGNINRLKSGQVLRIPTEQQMLERSP
REALSQVQAQNQSWRGSRNPAAGSAGARQLDATQRNAAGSAPSKVDATDNLRLVSGEGKASKGADKGGKGDSKALADTLA
VTKESLDSTRRENEELQSRMQDLQSQLDKLQKLIQLKDAQLAKLQGQLGAEGQGAAQPNAALPDASQPNAAAQAPAQPGT
PAAAAPTPAPAGEAPAAPAQPPVAPPPAPAAEKPPAPAVPVQAAEQPAPSFLDELLANPLWLAVIGGSALLALLVLLMIL
SRRNAQKEKEEAQAFAADTGEEQEDALDLGKDGFDDLTLDEPEPQVAAVAPQVEKTTAQTSDALGEADIYIAYGRFNQAA
ELLQNAIYDEPQRTDLRLKLMEVYAEMGDREGFARQENELREIGGAQPQVEQLKSRYPAMVAVAAVAGLAGAKLAQDELD
SFSLDDLSLDDSGHAAKPDAAGQDLDDAFDLSLDDLGGDDVQADLKSDSGALDDLTLDSDLDLAASTPADKPVDDLDFGL
DFAELAETPSQPKHDDLGDFSLDLDAPEDKLSDDDFLLSLNDEVPAAAPADNEFTLDTEAAEEPALSLPDDFDLSLADEP
TEPAAPEKGEDSFAAQLDEVSAQLDELASNLDEPKSATPSFSAEDAAVASALDGDADDDFDFLSGADEAATKLDLARAYI
DMGDSEGARDILDEVLAEGNDSQQAEARELLERLA

Nucleotide


Download         Length: 2748 bp        

>NTDB_id=479942 EBO27_RS09305 WP_057387035.1 1985756..1988503(+) (fimV) [Pseudomonas aeruginosa strain PA3]
ATGGTTCGGCTTCGTACACTGGTTCGGGCAATCGCGGCGGCCTCGGTCCTGACTTCCGGCATGGCGCATGGATTGGGACT
GGGGGAAATCACCCTGAAGTCGGCGTTGAACCAACCGTTGGATGCCGAGATCGAGCTGCTCGAAGTTCGTGACCTGGGTT
CGGGCGAGGTGATCCCGAGCCTGGCGTCGCCGGAAGAGTTCAGCAAGGCGGGCGTCGATCGCCTGTACTACCTCACCGAC
CTGAAGTTCACGCCGGTGGTGAAGCCCAACGGCAAGAGCGTCATTCGCGTGACCTCGTCGAAGCCGGTGCAGGAGCCCTA
CCTGAACTTCCTGGTCCAGGTGCTCTGGCCGAACGGCCGCCTGCTGCGCGAGTACACCGTCCTGCTGGATCCGCCGCTGT
ACTCCCCGCAGGCCGCGGCAAGCGCTCCGCAAGCGCCGGTCAGCGCGCCGCGCGCGACCGGCGCCCCGCGAGCCCCGCAG
GCTCCGGCTCCGGTGCGTACCACCGCGCCGGCAGGCAGCGACACCTATCGCACCGTTTCCAACGACACGCTCTGGGAGAT
CGCCCAGCGCAACCGTACCGATCGCGTTTCCGTACCCCAGGCGATGCTCGCGTTCCAGGAGCTGAATCCGGGCGCCTTCG
TCGATGGCAACATCAACCGGCTGAAGAGCGGCCAGGTCCTGCGCATTCCCACCGAACAGCAGATGCTGGAGCGCTCGCCG
CGCGAGGCGCTGTCCCAGGTGCAGGCGCAGAACCAGAGCTGGCGCGGCAGCCGCAATCCGGCCGCGGGCAGCGCTGGCGC
CAGGCAGTTGGATGCGACCCAGCGCAATGCCGCCGGGTCGGCGCCATCCAAGGTCGACGCCACGGACAATCTGCGCCTGG
TGTCTGGCGAGGGCAAGGCCAGCAAGGGTGCCGACAAGGGCGGGAAGGGCGACAGCAAGGCGCTCGCCGATACCCTGGCG
GTGACCAAGGAAAGCCTCGACAGCACTCGCCGCGAGAACGAAGAACTGCAGAGTCGCATGCAGGATCTGCAGAGCCAGTT
GGACAAGCTGCAGAAGTTGATCCAGCTGAAGGACGCCCAGTTGGCCAAGCTGCAAGGGCAGTTGGGCGCCGAAGGCCAGG
GCGCAGCCCAGCCGAACGCAGCCCTGCCGGATGCGTCCCAGCCCAATGCGGCCGCGCAGGCGCCGGCTCAGCCCGGGACT
CCTGCTGCGGCAGCGCCGACTCCTGCTCCAGCCGGAGAAGCACCCGCCGCTCCGGCGCAGCCTCCGGTGGCGCCGCCGCC
CGCGCCAGCTGCCGAGAAGCCTCCGGCACCTGCCGTTCCGGTACAGGCGGCAGAGCAGCCGGCACCGAGCTTCCTCGACG
AACTGCTGGCCAACCCGCTGTGGTTGGCGGTGATCGGCGGTAGCGCACTGCTGGCGTTGCTGGTGCTGCTGATGATCCTG
TCGCGGCGCAATGCGCAGAAAGAGAAGGAAGAAGCCCAGGCTTTCGCCGCGGATACCGGCGAGGAACAGGAGGATGCGCT
GGACCTGGGAAAGGACGGCTTCGACGACCTGACCCTCGACGAGCCTGAGCCGCAGGTCGCAGCCGTCGCTCCGCAGGTCG
AGAAGACCACCGCGCAGACTTCCGATGCGCTGGGCGAGGCCGACATCTATATCGCCTACGGGCGTTTCAACCAGGCCGCC
GAACTGTTGCAGAACGCCATCTACGACGAGCCGCAGCGCACCGACCTGCGCCTCAAGCTGATGGAAGTCTATGCCGAGAT
GGGCGATCGCGAAGGTTTCGCTCGCCAGGAAAACGAGCTGCGCGAAATCGGCGGCGCACAGCCGCAGGTCGAGCAGCTCA
AGTCGCGCTATCCGGCAATGGTCGCGGTCGCCGCGGTTGCCGGCCTGGCCGGCGCCAAGCTGGCGCAGGACGAGCTGGAT
AGCTTCAGCCTTGACGACCTGTCGCTCGACGACAGCGGTCACGCGGCCAAGCCGGATGCGGCAGGACAGGATCTCGACGA
CGCCTTCGACCTGAGCCTGGACGACCTGGGCGGCGACGACGTGCAGGCCGACCTCAAGTCCGACAGCGGGGCGCTGGACG
ACCTGACCCTGGACAGCGATCTGGACCTGGCGGCCTCGACCCCGGCGGACAAGCCTGTCGACGATCTCGACTTCGGCCTG
GATTTCGCGGAGTTGGCAGAGACTCCGAGCCAACCCAAGCATGACGACCTGGGCGATTTCTCCCTGGATCTCGATGCGCC
GGAAGACAAGCTTTCGGACGACGACTTCCTGCTTTCGCTGAACGACGAAGTGCCCGCCGCGGCGCCCGCCGACAACGAAT
TCACCCTCGATACCGAGGCTGCCGAAGAGCCGGCGTTGTCCCTGCCGGACGACTTCGACCTGTCGCTGGCCGACGAGCCG
ACGGAGCCGGCCGCTCCGGAGAAGGGCGAGGACAGTTTCGCCGCCCAGTTGGACGAGGTGAGTGCGCAGTTGGACGAGTT
GGCCAGCAACCTTGACGAGCCGAAGAGCGCGACGCCGAGTTTCTCCGCCGAAGATGCAGCGGTCGCCTCCGCCCTGGACG
GAGACGCCGACGATGACTTCGACTTCCTCTCCGGTGCCGACGAAGCGGCGACCAAGCTGGATCTGGCTCGCGCCTACATC
GACATGGGCGATAGCGAAGGCGCGCGCGATATCCTCGACGAAGTCCTGGCCGAAGGTAATGACAGCCAGCAGGCGGAAGC
CCGCGAGTTGCTGGAGCGCCTGGCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

99.129

100

0.996