Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   IAU63_RS01575 Genome accession   NZ_CP061030
Coordinates   276438..277154 (+) Length   238 a.a.
NCBI ID   WP_014613411.1    Uniprot ID   X2JA42
Organism   Staphylococcus pseudintermedius strain Z0118SP0108     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 271438..282154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAU63_RS01550 - 272844..273647 (+) 804 WP_101458021.1 carbon-nitrogen family hydrolase -
  IAU63_RS01560 - 274403..274969 (+) 567 WP_014613414.1 accessory gene regulator AgrB -
  IAU63_RS01565 - 274971..275108 (+) 138 WP_014613413.1 cyclic lactone autoinducer peptide -
  IAU63_RS01570 - 275369..276424 (+) 1056 WP_241538065.1 sensor histidine kinase -
  IAU63_RS01575 agrA 276438..277154 (+) 717 WP_014613411.1 LytTR family DNA-binding domain-containing protein Regulator
  IAU63_RS01580 - 277214..278158 (-) 945 WP_063278587.1 carbohydrate kinase -
  IAU63_RS01585 - 278162..279646 (-) 1485 WP_187470855.1 sucrose-6-phosphate hydrolase -
  IAU63_RS01590 - 279702..280649 (-) 948 WP_187470856.1 LacI family DNA-binding transcriptional regulator -
  IAU63_RS12860 - 280987..281101 (+) 115 Protein_280 ribose transporter RbsU -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28002.15 Da        Isoelectric Point: 5.4331

>NTDB_id=479891 IAU63_RS01575 WP_014613411.1 276438..277154(+) (agrA) [Staphylococcus pseudintermedius strain Z0118SP0108]
MKILICEDDPKQRERMVSIIENYIMIEEKPMKIELATNDPYAILETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITSVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=479891 IAU63_RS01575 WP_014613411.1 276438..277154(+) (agrA) [Staphylococcus pseudintermedius strain Z0118SP0108]
ATGAAAATTTTGATTTGTGAGGATGATCCTAAACAACGCGAACGTATGGTGTCCATTATTGAAAACTATATTATGATTGA
AGAGAAGCCGATGAAAATTGAGCTTGCTACCAATGACCCTTATGCTATCTTAGAAACTTCTAAAAACATGACTGATATTG
GCTGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAACGGGATTAAATTAGGGAGCGAAATTCGTAAGCACGATCCT
GTTGGGAATATTATTTTTGTGACGAGTCATAGTGAGCTGACGTACTTGACTTTTGTCTATAAAGTGGCTGCCATGGATTT
TATTTTTAAAGATGATCCTGAAGAATTAAGGACACGCATTATCGATTGTTTAGAAACAGCATTAAAACGGCTTGATTTAT
TAACAAAAGATCATACTGTTGAAACTTTGGAACTCAAACGTGGAACCAGCTCGGTTTACGTGAACTATGACGACGTGATG
TTTTTCGAGTCCTCACCGAAGTCACATCGTTTAATCGCGCATTTAGACAATCGTCAAATCGAATTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGATCGATTCTTCAGATGCCACAACAGTTATGTGCTAAACAGAAGAAATATTACAAGTGTCG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTGTCGGTGCGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(152-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X2JA42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

83.193

100

0.832