Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | IAU62_RS11920 | Genome accession | NZ_CP061029 |
| Coordinates | 2488724..2490097 (+) | Length | 457 a.a. |
| NCBI ID | WP_002486697.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain Z0118SE0132 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2483724..2495097
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IAU62_RS11905 | - | 2483990..2484553 (+) | 564 | WP_002477498.1 | UvrB/UvrC motif-containing protein | - |
| IAU62_RS11910 | - | 2484543..2485550 (+) | 1008 | WP_099774742.1 | protein arginine kinase | - |
| IAU62_RS11915 | - | 2485564..2488017 (+) | 2454 | WP_002458652.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| IAU62_RS11920 | radA | 2488724..2490097 (+) | 1374 | WP_002486697.1 | DNA repair protein RadA | Machinery gene |
| IAU62_RS11925 | - | 2490151..2491209 (+) | 1059 | WP_002475537.1 | PIN/TRAM domain-containing protein | - |
| IAU62_RS11930 | gltX | 2491619..2493073 (+) | 1455 | WP_038813067.1 | glutamate--tRNA ligase | - |
| IAU62_RS11935 | cysE | 2493482..2494111 (+) | 630 | WP_172952487.1 | serine O-acetyltransferase | - |
Sequence
Protein
Download Length: 457 a.a. Molecular weight: 50212.82 Da Isoelectric Point: 7.5278
>NTDB_id=479885 IAU62_RS11920 WP_002486697.1 2488724..2490097(+) (radA) [Staphylococcus epidermidis strain Z0118SE0132]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKVAHPKHGVKTKETAGKVQKLNSVKHEATPRLLTESKEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICAALSQNKNVLYITGEESINQTKLRADRLEEDSSHLNVLAETDLEVIHQAVK
EERPDLLVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVLNPSEMFLEERSTNVPGSTIVPTMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSIIVATASSFKDQAVDGLDCFVGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRAIIPQTNIGGWTFPEGIQVVGVSSVHEALKYALHSKPR
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKVAHPKHGVKTKETAGKVQKLNSVKHEATPRLLTESKEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICAALSQNKNVLYITGEESINQTKLRADRLEEDSSHLNVLAETDLEVIHQAVK
EERPDLLVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVLNPSEMFLEERSTNVPGSTIVPTMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSIIVATASSFKDQAVDGLDCFVGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRAIIPQTNIGGWTFPEGIQVVGVSSVHEALKYALHSKPR
Nucleotide
Download Length: 1374 bp
>NTDB_id=479885 IAU62_RS11920 WP_002486697.1 2488724..2490097(+) (radA) [Staphylococcus epidermidis strain Z0118SE0132]
ATGGCCAAGAAAAAAGTAATATTCGAATGTATGGCATGTGGCTATCAATCTCCTAAGTGGATGGGTAAGTGCCCTAACTG
CGGCGCGTGGAATCAAATGGAAGAAATAGTAGAAAAGGTTGCTCATCCTAAACATGGTGTAAAAACAAAAGAAACAGCAG
GTAAGGTACAAAAGTTAAATAGTGTTAAGCATGAAGCTACCCCTAGACTACTTACAGAATCAAAGGAATTTAACCGCGTT
TTAGGTGGAGGTATTGTAAGTGGTTCATTAGTACTAATAGGTGGAGACCCAGGTATTGGTAAGTCGACTTTATTGCTACA
AATTTGTGCTGCGCTGTCACAAAATAAGAATGTTTTATATATTACTGGTGAGGAATCTATTAATCAAACTAAGTTGCGCG
CTGATCGTTTGGAAGAAGATTCTAGTCATCTTAATGTTTTAGCCGAAACTGATTTAGAAGTGATACATCAAGCTGTAAAA
GAAGAGAGACCTGACTTACTTGTTGTTGATTCGATTCAAACAATCTATCATCCGGAAATTAGTTCTGCACCTGGATCGGT
ATCACAAGTAAGAGAGAGTACACAAAGTTTAATGAACATTGCTAAACAGATGAATATTGCCACATTTATTGTGGGACACG
TAACAAAAGAAGGACAAATCGCCGGACCAAGATTATTGGAACATATGGTTGATACAGTTCTTTATTTTGAAGGAGACGAG
CATCACGCTTATCGTATCCTTAGAGCAGTAAAAAATAGATTTGGTTCTACAAATGAGATGGGGATTTTCGAAATGAAGCA
AAGTGGATTAAAAGGTGTACTTAATCCTTCTGAAATGTTTTTAGAGGAACGTTCTACAAATGTTCCGGGCTCTACAATCG
TCCCCACTATGGAAGGAACAAGACCACTACTCATTGAAGTCCAAGCGCTTGTTACACCAACTACATTTAATAATCCTAGA
CGAATGGCTACAGGTATAGATCATAATCGATTAAGTTTACTTATGGCGGTTCTAGAAAAAAAGGAAAACTATTTACTCCA
ACAACAAGATGCCTATATTAAAGTAGCAGGTGGCGTCAAATTAACAGAACCTGCTGTTGATTTAAGTATTATTGTTGCGA
CAGCATCAAGTTTTAAAGATCAAGCTGTTGATGGATTAGATTGTTTTGTGGGTGAAGTTGGATTAACAGGTGAAGTACGC
AGAGTATCTCGCATAGAGCAACGTGTTCAAGAAGCGGCCAAACTAGGGTTTAAAAGAGCTATTATTCCACAGACAAATAT
TGGAGGTTGGACATTCCCAGAAGGCATCCAAGTCGTTGGTGTTTCATCAGTACATGAAGCTTTAAAATATGCATTACATT
CAAAACCGAGATAA
ATGGCCAAGAAAAAAGTAATATTCGAATGTATGGCATGTGGCTATCAATCTCCTAAGTGGATGGGTAAGTGCCCTAACTG
CGGCGCGTGGAATCAAATGGAAGAAATAGTAGAAAAGGTTGCTCATCCTAAACATGGTGTAAAAACAAAAGAAACAGCAG
GTAAGGTACAAAAGTTAAATAGTGTTAAGCATGAAGCTACCCCTAGACTACTTACAGAATCAAAGGAATTTAACCGCGTT
TTAGGTGGAGGTATTGTAAGTGGTTCATTAGTACTAATAGGTGGAGACCCAGGTATTGGTAAGTCGACTTTATTGCTACA
AATTTGTGCTGCGCTGTCACAAAATAAGAATGTTTTATATATTACTGGTGAGGAATCTATTAATCAAACTAAGTTGCGCG
CTGATCGTTTGGAAGAAGATTCTAGTCATCTTAATGTTTTAGCCGAAACTGATTTAGAAGTGATACATCAAGCTGTAAAA
GAAGAGAGACCTGACTTACTTGTTGTTGATTCGATTCAAACAATCTATCATCCGGAAATTAGTTCTGCACCTGGATCGGT
ATCACAAGTAAGAGAGAGTACACAAAGTTTAATGAACATTGCTAAACAGATGAATATTGCCACATTTATTGTGGGACACG
TAACAAAAGAAGGACAAATCGCCGGACCAAGATTATTGGAACATATGGTTGATACAGTTCTTTATTTTGAAGGAGACGAG
CATCACGCTTATCGTATCCTTAGAGCAGTAAAAAATAGATTTGGTTCTACAAATGAGATGGGGATTTTCGAAATGAAGCA
AAGTGGATTAAAAGGTGTACTTAATCCTTCTGAAATGTTTTTAGAGGAACGTTCTACAAATGTTCCGGGCTCTACAATCG
TCCCCACTATGGAAGGAACAAGACCACTACTCATTGAAGTCCAAGCGCTTGTTACACCAACTACATTTAATAATCCTAGA
CGAATGGCTACAGGTATAGATCATAATCGATTAAGTTTACTTATGGCGGTTCTAGAAAAAAAGGAAAACTATTTACTCCA
ACAACAAGATGCCTATATTAAAGTAGCAGGTGGCGTCAAATTAACAGAACCTGCTGTTGATTTAAGTATTATTGTTGCGA
CAGCATCAAGTTTTAAAGATCAAGCTGTTGATGGATTAGATTGTTTTGTGGGTGAAGTTGGATTAACAGGTGAAGTACGC
AGAGTATCTCGCATAGAGCAACGTGTTCAAGAAGCGGCCAAACTAGGGTTTAAAAGAGCTATTATTCCACAGACAAATAT
TGGAGGTTGGACATTCCCAGAAGGCATCCAAGTCGTTGGTGTTTCATCAGTACATGAAGCTTTAAAATATGCATTACATT
CAAAACCGAGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Bacillus subtilis subsp. subtilis str. 168 |
66.449 |
100 |
0.667 |
| radA | Streptococcus pneumoniae Rx1 |
60.802 |
98.249 |
0.597 |
| radA | Streptococcus pneumoniae D39 |
60.802 |
98.249 |
0.597 |
| radA | Streptococcus pneumoniae R6 |
60.802 |
98.249 |
0.597 |
| radA | Streptococcus pneumoniae TIGR4 |
60.802 |
98.249 |
0.597 |
| radA | Streptococcus mitis NCTC 12261 |
60.802 |
98.249 |
0.597 |
| radA | Streptococcus mitis SK321 |
60.802 |
98.249 |
0.597 |