Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   IAU62_RS09660 Genome accession   NZ_CP061029
Coordinates   1981785..1982450 (-) Length   221 a.a.
NCBI ID   WP_002447011.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain Z0118SE0132     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1976785..1987450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAU62_RS09640 - 1977315..1977905 (-) 591 WP_002447015.1 DUF4064 domain-containing protein -
  IAU62_RS09645 - 1978009..1980021 (-) 2013 WP_002495980.1 FtsX-like permease family protein -
  IAU62_RS09650 - 1980023..1980772 (-) 750 WP_002495981.1 ABC transporter ATP-binding protein -
  IAU62_RS09655 braS 1980883..1981779 (-) 897 WP_002447012.1 HAMP domain-containing sensor histidine kinase Regulator
  IAU62_RS09660 braR 1981785..1982450 (-) 666 WP_002447011.1 response regulator transcription factor Regulator
  IAU62_RS09665 - 1982481..1982660 (-) 180 WP_002447010.1 hypothetical protein -
  IAU62_RS09670 - 1982957..1984426 (+) 1470 WP_002447009.1 alkaline phosphatase -
  IAU62_RS09675 - 1984550..1986094 (-) 1545 WP_002447008.1 NAD(P)H-binding protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25643.77 Da        Isoelectric Point: 5.1924

>NTDB_id=479878 IAU62_RS09660 WP_002447011.1 1981785..1982450(-) (braR) [Staphylococcus epidermidis strain Z0118SE0132]
MKIFIVEDDLVIAESLANELSKWNYEVHVIDNFEKIMEDFRRVEPQLVLLDINLPTLNGFHWCQEIRKVSRVPIMFISSR
TDNMDQILAIQMGGDDFIEKPFNLSLTVAKIQALLRRTYDLSIARDEIAVKGCKLIVDEAKLSKDNEHVQLSLTELQILK
LLFQNENKYVSRTALIEKCWESENFIDDNTLAVNMTRLRKKLLSIGVDNLIETKKNVGYRV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=479878 IAU62_RS09660 WP_002447011.1 1981785..1982450(-) (braR) [Staphylococcus epidermidis strain Z0118SE0132]
ATGAAGATTTTCATTGTAGAAGACGATTTAGTGATTGCTGAAAGTTTAGCTAATGAGCTATCTAAATGGAATTATGAGGT
TCATGTGATTGATAATTTTGAAAAGATAATGGAAGATTTTCGCAGAGTAGAACCACAACTCGTATTATTAGATATCAATC
TACCAACCCTTAATGGCTTCCATTGGTGCCAAGAAATACGAAAAGTATCTCGTGTGCCTATTATGTTTATTAGTTCAAGA
ACAGATAATATGGATCAAATTCTGGCTATTCAAATGGGTGGCGATGATTTTATCGAGAAACCATTTAACTTGTCTTTAAC
AGTAGCTAAAATTCAGGCACTATTGCGTCGCACTTATGATTTATCAATAGCTCGTGATGAAATAGCTGTTAAAGGTTGTA
AACTAATTGTTGATGAGGCGAAGCTTAGCAAGGATAATGAACATGTTCAACTTTCCTTAACAGAGCTACAGATATTAAAA
TTGTTATTTCAAAATGAAAATAAATATGTAAGTCGTACAGCTTTAATTGAGAAATGTTGGGAGTCTGAGAATTTTATTGA
TGACAATACGCTAGCAGTAAATATGACGCGATTACGAAAAAAATTACTTTCTATCGGTGTCGATAATTTAATTGAGACAA
AGAAAAATGTAGGATACAGGGTTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-111)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

78.733

100

0.787