Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   J5X85_RS09180 Genome accession   NZ_CP071954
Coordinates   1942445..1943872 (-) Length   475 a.a.
NCBI ID   WP_072198855.1    Uniprot ID   -
Organism   Escherichia coli strain SB0258h1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1937445..1948872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X85_RS09150 (J5X85_09150) yeeZ 1937500..1938324 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  J5X85_RS09155 (J5X85_09155) yeeY 1938370..1939299 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  J5X85_RS09160 (J5X85_09160) yoeI 1939514..1939576 (+) 63 WP_010723108.1 membrane protein YoeI -
  J5X85_RS09165 (J5X85_09165) plaP 1939566..1940924 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  J5X85_RS09170 (J5X85_09170) tsuA 1941103..1942161 (+) 1059 WP_023568741.1 thiosulfate utilization transporter TsuA/YeeE -
  J5X85_RS09175 (J5X85_09175) tsuB 1942175..1942402 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  J5X85_RS09180 (J5X85_09180) sbcB 1942445..1943872 (-) 1428 WP_072198855.1 exodeoxyribonuclease I Machinery gene
  J5X85_RS09185 (J5X85_09185) dacD 1944081..1945247 (+) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  J5X85_RS09190 (J5X85_09190) sbmC 1945366..1945839 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  J5X85_RS09195 (J5X85_09195) yeeA 1946037..1947095 (+) 1059 WP_001200891.1 FUSC family protein -
  J5X85_RS09200 (J5X85_09200) tmaR 1947267..1947596 (+) 330 WP_000450409.1 DUF496 family protein -
  J5X85_RS09205 (J5X85_09205) - 1947697..1947879 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  J5X85_RS09210 (J5X85_09210) - 1947951..1948079 (+) 129 Protein_1823 transposase domain-containing protein -
  J5X85_RS09215 (J5X85_09215) - 1948368..1948448 (-) 81 Protein_1824 hypothetical protein -
  J5X85_RS09220 (J5X85_09220) yeeW 1948494..1948688 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54485.80 Da        Isoelectric Point: 5.6070

>NTDB_id=479858 J5X85_RS09180 WP_072198855.1 1942445..1943872(-) (sbcB) [Escherichia coli strain SB0258h1]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=479858 J5X85_RS09180 WP_072198855.1 1942445..1943872(-) (sbcB) [Escherichia coli strain SB0258h1]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCTATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGTTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579