Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IBC03_RS08820 Genome accession   NZ_CP061025
Coordinates   1714224..1715585 (-) Length   453 a.a.
NCBI ID   WP_080998440.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 13496     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1709224..1720585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBC03_RS08790 (IBC03_08810) - 1709819..1710840 (-) 1022 Protein_1685 peptide ABC transporter ATP-binding protein -
  IBC03_RS08795 (IBC03_08815) rplA 1710968..1711657 (-) 690 WP_014608720.1 50S ribosomal protein L1 -
  IBC03_RS08800 (IBC03_08820) rplK 1711757..1712182 (-) 426 WP_002953535.1 50S ribosomal protein L11 -
  IBC03_RS08805 (IBC03_08825) - 1712354..1712707 (+) 354 WP_014608721.1 DUF3397 domain-containing protein -
  IBC03_RS08810 (IBC03_08830) - 1712799..1713296 (-) 498 WP_002947059.1 carbonic anhydrase -
  IBC03_RS08815 (IBC03_08835) - 1713439..1714135 (-) 697 Protein_1690 TIGR00266 family protein -
  IBC03_RS08820 (IBC03_08840) radA 1714224..1715585 (-) 1362 WP_080998440.1 DNA repair protein RadA Machinery gene
  IBC03_RS08825 (IBC03_08845) - 1715763..1716209 (-) 447 WP_002947069.1 dUTP diphosphatase -
  IBC03_RS08830 (IBC03_08850) - 1716423..1717025 (+) 603 Protein_1693 NADPH-dependent FMN reductase -
  IBC03_RS10330 - 1717044..1718295 (+) 1252 Protein_1694 NAD(P)H-dependent oxidoreductase -
  IBC03_RS08845 (IBC03_08865) - 1718421..1719201 (+) 781 Protein_1695 formate/nitrite transporter family protein -
  IBC03_RS10605 (IBC03_08870) - 1719210..1719795 (+) 586 Protein_1696 MptD family putative ECF transporter S component -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49418.80 Da        Isoelectric Point: 6.6528

>NTDB_id=479838 IBC03_RS08820 WP_080998440.1 1714224..1715585(-) (radA) [Streptococcus thermophilus strain 13496]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQEVKNARVSLTGEKSKPTKLKEVSSISYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
GIKPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELIQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFVGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYVPKNSLHGMKIPEGIQVIGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=479838 IBC03_RS08820 WP_080998440.1 1714224..1715585(-) (radA) [Streptococcus thermophilus strain 13496]
ATAGCTAAGAAAAAATCAACTTTTGTTTGTAGAGAATGTGGCTACAATTCACCCAAATATCTAGGGCGCTGTCCCAATTG
TTCTTCTTGGTCCTCTTTTGAGGAAGAGGTTGAGGTGCAGGAGGTTAAAAATGCCCGTGTCAGTTTGACGGGTGAAAAGT
CCAAACCTACTAAGTTAAAAGAAGTCTCTTCAATTAGTTATGCCCGCATAAAAACCGATATGGACGAGTTTAACCGTGTT
TTAGGTGGCGGTGTGGTTCCGGGGAGTTTGGTTCTTATTGGAGGAGATCCAGGAATAGGGAAATCGACCCTCCTCTTACA
GGTGTCAACACAGCTGGCTAACAAGGGAACTGTCCTCTATGTTTCTGGGGAAGAATCGGCCGAGCAAATCAAATTGCGGA
GTGAACGTTTAGGTGATATTGATAACGAATTTTATCTGTATGCTGAGACCAATATGCAAGCAGTCCGTAGTCAAGTGGAG
GGTATCAAACCCGATTTCCTCATTATTGATTCTATTCAGACCATCATGAGCCCAGAGATCTCTGGCGTTCAAGGTTCTGT
TTCCCAGGTTCGTGAAGTAACTGCCGAACTCATACAGATTGCCAAAACCAATAACATTGCCACTTTTATTGTTGGGCATG
TGACCAAGGAGGGACAGCTGGCTGGACCACGTATGTTGGAGCACATGGTGGATACTGTGCTTTATTTTGAGGGGGAACGT
CATCATACTTTCCGTATTCTGAGGGCAGTTAAAAACCGTTTTGGTTCAACCAATGAGATTGGGATTTTTGAAATGCAGTC
AGGTGGTCTGGTCGAGGTACTAAACCCTAGCCAAGTTTTCTTAGAAGAACGCCTAGACGGTGCCACAGGTTCTGCCATTG
TTGTCACAATGGAGGGGAGTCGACCTATCCTAGCTGAGGTTCAAGCTTTGGTGACACCGACCGTCTTTGGTAACGCAAAG
CGGACAACGACGGGACTGGACTTTAACCGTGTCAGCCTTATCATGGCTGTCTTAGAGAAACGTTGCGGCCTTCTTCTCCA
AAATCAAGATGCCTATCTCAAATCAGCTGGTGGTGTCAAGTTGGACGAGCCAGCTATTGACCTTGCAGTTGCCGTTGCTA
TCGCTTCTAGTTACAAGGAGCTTCCAACCAATCCACAAGAAGCCTTCGTAGGAGAAATTGGCTTGACCGGAGAGATTCGT
CGTGTGACTCGTATTGAGCAGCGTATCAATGAAGCCGCTAAACTAGGTTTTACTAAGATTTATGTTCCTAAAAATTCGCT
TCATGGCATGAAGATTCCAGAAGGTATCCAGGTCATTGGGGTCACAACGGTAGGAGAAGTACTCAAAAAAGTCTTTTCTT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(61-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.962

100

0.89
  radA Streptococcus pneumoniae D39

88.962

100

0.89
  radA Streptococcus pneumoniae R6

88.962

100

0.89
  radA Streptococcus pneumoniae TIGR4

88.962

100

0.89
  radA Streptococcus mitis NCTC 12261

88.962

100

0.89
  radA Streptococcus mitis SK321

88.962

100

0.89
  radA Bacillus subtilis subsp. subtilis str. 168

61.148

100

0.611