Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   IBC03_RS07780 Genome accession   NZ_CP061025
Coordinates   1509126..1509857 (-) Length   243 a.a.
NCBI ID   WP_002951673.1    Uniprot ID   A0AAP2RM94
Organism   Streptococcus thermophilus strain 13496     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1504126..1514857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBC03_RS07755 (IBC03_07775) - 1505175..1506356 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  IBC03_RS07765 (IBC03_07785) trmB 1506592..1507233 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  IBC03_RS07770 (IBC03_07790) - 1507243..1508034 (-) 792 WP_002951667.1 phosphotransferase family protein -
  IBC03_RS07775 (IBC03_07795) pptB 1508092..1509129 (-) 1038 WP_011681529.1 ABC transporter permease Regulator
  IBC03_RS07780 (IBC03_07800) pptA 1509126..1509857 (-) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  IBC03_RS07785 (IBC03_07805) - 1509922..1510341 (+) 420 WP_011681530.1 HIT family protein -
  IBC03_RS07790 (IBC03_07810) - 1510338..1510646 (+) 309 WP_014608635.1 hypothetical protein -
  IBC03_RS07795 (IBC03_07815) - 1510688..1511419 (-) 732 WP_014608636.1 hypothetical protein -
  IBC03_RS07800 (IBC03_07820) - 1511438..1512073 (-) 636 WP_014727665.1 DUF4230 domain-containing protein -
  IBC03_RS10480 - 1512092..1512217 (-) 126 WP_011681534.1 hypothetical protein -
  IBC03_RS07805 (IBC03_07825) - 1512394..1513569 (+) 1176 WP_014608082.1 IS256-like element IS1191 family transposase -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26830.05 Da        Isoelectric Point: 4.4606

>NTDB_id=479834 IBC03_RS07780 WP_002951673.1 1509126..1509857(-) (pptA) [Streptococcus thermophilus strain 13496]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQDPASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKANGKSILMSTHVLDSAEKMCDRFVILHHGQILAQGTIDELRQTFGDSSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=479834 IBC03_RS07780 WP_002951673.1 1509126..1509857(-) (pptA) [Streptococcus thermophilus strain 13496]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTACGCTAATATTCCCGTCCTAAAAGATGTGACTTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGAAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCCT
ATGGAGGACAGATTGCCATTGATGGGTTAACTATTCAACAAGATCCAGCTAGCTATCGTCAGAAGATTGGCTATATTCCT
GAAACGCCAAGTCTTTATGAAGAATTGACGCTTCGTGAACATTTGGAAACGGTGTTGATGGCCTATGGTCTTGATGTGAC
TGAGGGTATGGCACGTGCGGACAAGTACCTCAAACTCTTTCGCTTAGATGAAAAGTTGGACTGGTTCCCAACTCAGTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCCTTTATTGTGAATCCAAGTCTTTTCATTGTTGATGAGCCCTTT
TTGGGATTGGATCCCTTGGCGATTTCTGATTTGATTGAGCTTCTGGCTGAGGAAAAAGCCAATGGCAAGTCTATTCTCAT
GTCGACTCACGTTTTGGATTCAGCTGAGAAGATGTGTGATCGCTTTGTGATTTTGCACCATGGACAGATCTTGGCACAGG
GGACGATTGATGAGCTTCGTCAGACCTTTGGTGACAGTAGTGCTAGTCTTAACGATATCTATATGCAGTTGACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

100

100

1
  pptA Streptococcus salivarius strain HSISS4

97.119

100

0.971