Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   IBC03_RS05500 Genome accession   NZ_CP061025
Coordinates   1053630..1054442 (-) Length   270 a.a.
NCBI ID   WP_011681204.1    Uniprot ID   A0AAP2RND8
Organism   Streptococcus thermophilus strain 13496     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1048630..1059442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBC03_RS10200 - 1048985..1049695 (-) 711 Protein_1027 GNAT family N-acetyltransferase -
  IBC03_RS05480 (IBC03_05490) - 1049805..1050740 (+) 936 WP_138496752.1 IS30 family transposase -
  IBC03_RS10205 - 1050762..1050924 (-) 163 Protein_1029 GNAT family N-acetyltransferase -
  IBC03_RS05485 (IBC03_05495) yidA 1051132..1051941 (+) 810 WP_011226081.1 sugar-phosphatase -
  IBC03_RS05490 (IBC03_05500) - 1051943..1053157 (+) 1215 WP_002953123.1 aminoacyltransferase -
  IBC03_RS05495 (IBC03_05505) - 1053209..1053570 (-) 362 Protein_1032 YbaN family protein -
  IBC03_RS05500 (IBC03_05510) vicX 1053630..1054442 (-) 813 WP_011681204.1 MBL fold metallo-hydrolase Regulator
  IBC03_RS05505 (IBC03_05515) vicK 1054448..1055788 (-) 1341 WP_011681205.1 cell wall metabolism sensor histidine kinase VicK Regulator
  IBC03_RS05510 (IBC03_05520) vicR 1055781..1056488 (-) 708 WP_011681206.1 response regulator YycF Regulator
  IBC03_RS05515 (IBC03_05525) - 1057027..1057794 (+) 768 WP_011681207.1 amino acid ABC transporter ATP-binding protein -
  IBC03_RS05520 (IBC03_05530) - 1057806..1058639 (+) 834 WP_011681208.1 transporter substrate-binding domain-containing protein -
  IBC03_RS05525 (IBC03_05535) - 1058657..1059355 (+) 699 WP_011681209.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30045.01 Da        Isoelectric Point: 5.5779

>NTDB_id=479820 IBC03_RS05500 WP_011681204.1 1053630..1054442(-) (vicX) [Streptococcus thermophilus strain 13496]
MTSELGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGM
DIYANEKTWQIMDSKNMLGKVDNSQKHIFSRGKLLTFGDIDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMA
GLIENADGYLIESNHDIEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAYMTME
NQLARADFGVGTDFKIFGTSPDTATPLTDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=479820 IBC03_RS05500 WP_011681204.1 1053630..1054442(-) (vicX) [Streptococcus thermophilus strain 13496]
ATGACCTCAGAATTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACCGGGAATTCCTTTTATTTGGAAACTCCAGA
AAAGAAGATTCTAGTGGATGCTGGTTTATCAGGAAAAAAAATTACAAGTTTGCTAGCGGAGATTGACCGTGATCCAAGTG
ATCTTGATGCTATCTTAGTAACACATGAACACAAGGACCATATCCATGGTGTAGGTGTTTTAGCTCGTAAATACGGCATG
GATATATACGCCAATGAGAAAACCTGGCAAATTATGGATAGTAAGAATATGCTAGGTAAGGTTGATAATAGTCAGAAACA
TATTTTTTCTCGCGGTAAGCTTCTAACCTTTGGTGATATCGACATTGAATCTTTCGGAGTTAGTCATGATGCCATTGATC
CACAATTTTACCGCTTTATGAAAGACGGAAAGAGCTTTGTCATGTTGACGGATACAGGCTATGTTTCAGACCGTATGGCT
GGTCTTATTGAAAATGCTGATGGCTATCTGATTGAATCTAATCATGATATTGAAATCTTGAGAGCAGGTTCTTATCCTTG
GTCAACCAAGCAACGTATCCTCTCTGATCAGGGTCACTTGTGTAATGAGGATGGAGCCGATGCTATGATTCGTACCATCG
GTAATAAAACTAAAAAGATTTATCTGGGTCACCTTTCTAAAGAAAATAATATCAAGGAATTGGCCTACATGACGATGGAA
AATCAGTTGGCTCGCGCTGACTTTGGTGTTGGAACTGACTTTAAGATTTTTGGTACCTCACCAGATACGGCGACCCCACT
AACAGATATTTAG

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.985

99.259

0.774