Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   IBC03_RS02360 Genome accession   NZ_CP061025
Coordinates   432940..433383 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 13496     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 427940..438383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBC03_RS02340 (IBC03_02340) - 428464..429216 (-) 753 WP_011680801.1 NUDIX hydrolase -
  IBC03_RS02345 (IBC03_02345) - 429280..430386 (-) 1107 WP_014608024.1 AAA family ATPase -
  IBC03_RS02350 (IBC03_02350) gdhA 430730..432082 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  IBC03_RS02355 (IBC03_02355) - 432340..432750 (+) 411 WP_011680804.1 peptide deformylase -
  IBC03_RS02360 (IBC03_02360) rcrR 432940..433383 (+) 444 WP_002945408.1 MarR family transcriptional regulator Regulator
  IBC03_RS02365 (IBC03_02365) rcrP 433387..435201 (+) 1815 WP_138496668.1 ABC transporter ATP-binding protein Regulator
  IBC03_RS02370 (IBC03_02370) rcrQ 435191..436969 (+) 1779 WP_011225561.1 ABC transporter ATP-binding protein Regulator
  IBC03_RS02375 (IBC03_02375) - 437125..437496 (+) 372 WP_232981380.1 GNAT family acetyltransferase -
  IBC03_RS02380 (IBC03_02380) - 437610..437876 (+) 267 WP_207563339.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=479808 IBC03_RS02360 WP_002945408.1 432940..433383(+) (rcrR) [Streptococcus thermophilus strain 13496]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=479808 IBC03_RS02360 WP_002945408.1 432940..433383(+) (rcrR) [Streptococcus thermophilus strain 13496]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537