Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   IBB94_RS02350 Genome accession   NZ_CP061024
Coordinates   448105..448548 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 13498     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 443105..453548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBB94_RS02330 (IBB94_02325) - 443625..444379 (-) 755 Protein_405 NUDIX hydrolase -
  IBB94_RS02335 (IBB94_02330) - 444443..445549 (-) 1107 WP_014608024.1 AAA family ATPase -
  IBB94_RS02340 (IBB94_02335) gdhA 445893..447245 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  IBB94_RS02345 (IBB94_02340) - 447504..447914 (+) 411 WP_011680804.1 peptide deformylase -
  IBB94_RS02350 (IBB94_02345) rcrR 448105..448548 (+) 444 WP_002945408.1 MarR family transcriptional regulator Regulator
  IBB94_RS02355 (IBB94_02350) rcrP 448552..450366 (+) 1815 WP_179971475.1 ABC transporter ATP-binding protein Regulator
  IBB94_RS02360 (IBB94_02355) rcrQ 450356..452134 (+) 1779 WP_207559749.1 ABC transporter ATP-binding protein Regulator
  IBB94_RS02365 (IBB94_02360) - 452290..452661 (+) 372 WP_041829277.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=479750 IBB94_RS02350 WP_002945408.1 448105..448548(+) (rcrR) [Streptococcus thermophilus strain 13498]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=479750 IBB94_RS02350 WP_002945408.1 448105..448548(+) (rcrR) [Streptococcus thermophilus strain 13498]
ATGCATGGTAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGTGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537