Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   IBB96_RS08870 Genome accession   NZ_CP061023
Coordinates   1717890..1718846 (-) Length   318 a.a.
NCBI ID   WP_011226622.1    Uniprot ID   A0A8D6XRE9
Organism   Streptococcus thermophilus strain 13499     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1712890..1723846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBB96_RS08840 (IBB96_08865) proC 1713450..1714220 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  IBB96_RS08845 (IBB96_08870) - 1714250..1714912 (-) 663 WP_011681679.1 type II CAAX endopeptidase family protein -
  IBB96_RS08850 (IBB96_08875) - 1715009..1715452 (-) 444 WP_011681680.1 hypothetical protein -
  IBB96_RS10360 - 1715526..1715951 (-) 426 WP_014608739.1 CPBP family intramembrane glutamic endopeptidase -
  IBB96_RS10365 - 1715908..1716183 (-) 276 WP_011681681.1 hypothetical protein -
  IBB96_RS08860 (IBB96_08885) - 1716195..1716392 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  IBB96_RS08865 (IBB96_08890) - 1716641..1717834 (-) 1194 WP_014608740.1 acetate kinase -
  IBB96_RS08870 (IBB96_08895) comYH 1717890..1718846 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  IBB96_RS08875 (IBB96_08900) comGG 1718891..1719208 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  IBB96_RS08880 (IBB96_08905) comYF 1719186..1719623 (-) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  IBB96_RS08885 (IBB96_08910) comGE 1719607..1719900 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  IBB96_RS08890 (IBB96_08915) comYD 1719872..1720300 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  IBB96_RS08895 (IBB96_08920) comYC 1720260..1720586 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  IBB96_RS08900 (IBB96_08925) comYB 1720583..1721683 (-) 1101 WP_116920398.1 competence type IV pilus assembly protein ComGB Machinery gene
  IBB96_RS08905 (IBB96_08930) comGA/cglA/cilD 1721565..1722506 (-) 942 WP_014608745.1 competence type IV pilus ATPase ComGA Machinery gene
  IBB96_RS08910 (IBB96_08935) - 1722587..1722949 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35857.00 Da        Isoelectric Point: 4.7123

>NTDB_id=479725 IBB96_RS08870 WP_011226622.1 1717890..1718846(-) (comYH) [Streptococcus thermophilus strain 13499]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=479725 IBB96_RS08870 WP_011226622.1 1717890..1718846(-) (comYH) [Streptococcus thermophilus strain 13499]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682