Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   J5F39_RS02545 Genome accession   NZ_CP071936
Coordinates   523867..525213 (-) Length   448 a.a.
NCBI ID   WP_001874898.1    Uniprot ID   -
Organism   Helicobacter pylori strain MTT03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 518867..530213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5F39_RS02520 aspA 518951..520357 (+) 1407 WP_001217501.1 aspartate ammonia-lyase -
  J5F39_RS02525 - 520402..520992 (+) 591 WP_078216979.1 uracil-DNA glycosylase family protein -
  J5F39_RS02530 - 521001..521201 (-) 201 Protein_494 fucosyltransferase -
  J5F39_RS02535 - 521472..522305 (+) 834 WP_078243019.1 sulfite exporter TauE/SafE family protein -
  J5F39_RS02540 msrB 522664..523743 (-) 1080 WP_283492127.1 peptide-methionine (R)-S-oxide reductase MsrB -
  J5F39_RS02545 radA/sms 523867..525213 (-) 1347 WP_001874898.1 DNA repair protein RadA Machinery gene
  J5F39_RS02550 - 525325..525558 (-) 234 WP_000415825.1 ribbon-helix-helix domain-containing protein -
  J5F39_RS02555 - 525714..526694 (-) 981 WP_283492128.1 iron-sulfur cluster assembly scaffold protein -
  J5F39_RS02560 - 526716..527879 (-) 1164 WP_000941677.1 NifS family cysteine desulfurase -
  J5F39_RS02565 - 528020..528490 (-) 471 WP_283492129.1 helix-turn-helix domain-containing protein -
  J5F39_RS02570 - 528556..529182 (+) 627 WP_283492130.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  J5F39_RS02575 - 529252..530106 (-) 855 WP_283492131.1 beta-1,4-N-acetylgalactosamyltransferase -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49444.46 Da        Isoelectric Point: 8.0293

>NTDB_id=479699 J5F39_RS02545 WP_001874898.1 523867..525213(-) (radA/sms) [Helicobacter pylori strain MTT03]
MAKKTSLFECQHCGFTSPKWLGKCVQCNAWESFIELNQAQKEVLHVLKKPIPQAQKSVSIAAIEHEEVIKFSSTQSELDI
VLGGGIAKGGLYLVGGSPGVGKSTLLLKVASGLAKNQQKVLYVSGEESLSQIKMRATRLDCIEKELYLLNEINWPVIKAN
IESENYFACVIDSIQTLYSPEISSAPGSISQVREITFELMRLAKTRDIAIFIIGHITKEGSIAGPRVLEHMVDSVLYFEG
DPSRELRILRSFKNRFGPTSEIGLFEMKEQGLVSAKEASSLFFSKEEPMEGSAITITLEGSRALILEIQALVSECSFGAP
KRLANGFDTNRLNMLIALLEKKLEIPLNRHDVFINVSGGIKISEPACDLAVIASILSSFKNRKIDNKTAFLGEVSLNGRI
LEAPNLNARLKEMENYGFLKAILPKKPSQKTSIKCYEANAVGKIVEWM

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=479699 J5F39_RS02545 WP_001874898.1 523867..525213(-) (radA/sms) [Helicobacter pylori strain MTT03]
TTGGCTAAAAAAACTTCTTTATTTGAGTGTCAGCATTGCGGTTTTACAAGCCCTAAATGGCTAGGAAAGTGCGTTCAGTG
CAACGCATGGGAGAGTTTTATAGAATTGAACCAAGCCCAAAAGGAAGTTTTACACGTGCTTAAAAAACCGATCCCACAAG
CGCAAAAAAGCGTTTCTATCGCTGCAATTGAGCATGAAGAAGTCATCAAGTTTTCTTCCACTCAAAGCGAGTTGGATATT
GTTTTAGGTGGGGGGATCGCTAAAGGGGGGTTGTATTTAGTGGGGGGGAGTCCTGGGGTGGGGAAATCCACTCTGCTTTT
AAAAGTGGCTTCTGGCTTGGCCAAAAACCAGCAAAAGGTTTTGTATGTGAGCGGGGAAGAGAGCTTGAGCCAGATTAAAA
TGCGCGCCACTAGATTGGATTGCATAGAAAAAGAATTGTATCTGCTTAATGAGATCAATTGGCCTGTGATTAAGGCTAAT
ATAGAAAGTGAAAATTATTTTGCTTGCGTGATTGATTCCATCCAAACGCTTTATTCGCCAGAGATTTCTTCAGCACCCGG
CTCTATTTCGCAAGTGCGAGAGATCACTTTTGAGCTCATGCGTTTAGCCAAAACAAGAGATATTGCTATTTTTATCATCG
GTCATATCACTAAAGAAGGGAGTATCGCAGGGCCTAGGGTGCTAGAGCATATGGTGGATAGCGTGCTGTATTTTGAAGGC
GATCCCAGTAGGGAACTAAGGATTTTAAGGAGTTTTAAAAACCGCTTTGGCCCTACGAGTGAGATCGGCTTGTTTGAGAT
GAAAGAGCAGGGTTTGGTGAGCGCTAAAGAAGCTTCAAGCTTGTTTTTTTCTAAAGAAGAGCCTATGGAGGGGAGTGCGA
TTACCATCACTTTAGAAGGATCAAGGGCGTTGATTTTAGAGATTCAGGCGTTGGTGAGCGAGTGCAGTTTTGGAGCGCCC
AAACGATTAGCGAACGGGTTTGACACCAACCGCCTTAACATGCTCATCGCCTTATTAGAAAAAAAGCTAGAAATCCCCTT
AAACCGCCATGATGTGTTTATCAATGTGAGCGGAGGGATTAAGATTAGCGAGCCGGCTTGCGATTTAGCGGTCATTGCCA
GTATCCTTTCAAGCTTTAAAAACAGAAAAATTGACAATAAAACGGCGTTTTTGGGCGAAGTGAGTTTGAATGGCAGGATT
TTAGAAGCCCCTAATTTGAACGCTAGATTGAAAGAAATGGAAAATTACGGCTTTTTAAAAGCCATTTTGCCTAAAAAACC
CAGTCAAAAAACCTCGATCAAATGCTATGAAGCCAATGCGGTGGGCAAGATTGTTGAATGGATGTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(66-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.073

95.313

0.449
  radA Streptococcus pneumoniae Rx1

46.244

95.089

0.44
  radA Streptococcus pneumoniae D39

46.244

95.089

0.44
  radA Streptococcus pneumoniae R6

46.244

95.089

0.44
  radA Streptococcus pneumoniae TIGR4

46.244

95.089

0.44
  radA Streptococcus mitis SK321

46.244

95.089

0.44
  radA Streptococcus mitis NCTC 12261

46.009

95.089

0.437