Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   NMBM01240149_RS06865 Genome accession   NC_017514
Coordinates   1343874..1344842 (-) Length   322 a.a.
NCBI ID   WP_014582408.1    Uniprot ID   -
Organism   Neisseria meningitidis M01-240149     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1331565..1346151 1343874..1344842 within 0


Gene organization within MGE regions


Location: 1331565..1346151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM01240149_RS06755 (NMBM01240149_1179) - 1331565..1331765 (+) 201 WP_002219431.1 hypothetical protein -
  NMBM01240149_RS06760 (NMBM01240149_1180) - 1331833..1332192 (+) 360 WP_002219432.1 hypothetical protein -
  NMBM01240149_RS06765 (NMBM01240149_1181) - 1332217..1333071 (+) 855 WP_002219433.1 YfdQ family protein -
  NMBM01240149_RS06770 (NMBM01240149_1182) - 1333141..1333356 (+) 216 WP_002219434.1 hypothetical protein -
  NMBM01240149_RS06775 (NMBM01240149_1183) - 1333391..1333651 (+) 261 WP_002223443.1 NGO1622 family putative holin -
  NMBM01240149_RS06780 (NMBM01240149_1184) - 1333648..1333941 (+) 294 WP_002241415.1 hypothetical protein -
  NMBM01240149_RS06785 (NMBM01240149_1185) - 1333944..1334135 (+) 192 WP_002219435.1 type ISP restriction/modification enzyme -
  NMBM01240149_RS06790 (NMBM01240149_1186) - 1334135..1334275 (+) 141 WP_002220688.1 hypothetical protein -
  NMBM01240149_RS06795 (NMBM01240149_1187) - 1334272..1334481 (+) 210 WP_002220687.1 hypothetical protein -
  NMBM01240149_RS06800 (NMBM01240149_1188) - 1334539..1335456 (-) 918 WP_002241414.1 KilA-N domain-containing protein -
  NMBM01240149_RS06805 (NMBM01240149_1189) - 1336325..1336804 (-) 480 WP_002241413.1 DUF4760 domain-containing protein -
  NMBM01240149_RS06820 (NMBM01240149_1191) - 1337240..1337620 (-) 381 WP_002220683.1 type II toxin-antitoxin system PemK/MazF family toxin -
  NMBM01240149_RS06825 (NMBM01240149_1192) - 1337777..1338973 (-) 1197 WP_014581123.1 tyrosine-type recombinase/integrase -
  NMBM01240149_RS06840 (NMBM01240149_1195) yaaA 1339504..1340283 (-) 780 WP_002222649.1 peroxide stress protein YaaA -
  NMBM01240149_RS15840 - 1340332..1340457 (-) 126 Protein_1250 IS5/IS1182 family transposase -
  NMBM01240149_RS06845 (NMBM01240149_1196) dapC 1340545..1341732 (-) 1188 WP_002222650.1 succinyldiaminopimelate transaminase -
  NMBM01240149_RS06850 (NMBM01240149_1197) dut 1341809..1342261 (-) 453 WP_002229326.1 dUTP diphosphatase -
  NMBM01240149_RS06855 (NMBM01240149_1198) pilX 1342824..1343297 (-) 474 WP_014581124.1 PilX family type IV pilin Machinery gene
  NMBM01240149_RS06860 (NMBM01240149_1199) pilK 1343302..1343895 (-) 594 WP_014581125.1 pilus assembly PilX family protein Machinery gene
  NMBM01240149_RS06865 (NMBM01240149_1200) pilJ 1343874..1344842 (-) 969 WP_014582408.1 PilW family protein Machinery gene
  NMBM01240149_RS06870 (NMBM01240149_1201) pilV 1344839..1345453 (-) 615 WP_014581127.1 type IV pilus modification protein PilV Machinery gene
  NMBM01240149_RS06875 (NMBM01240149_1202) pilH 1345483..1346151 (-) 669 WP_014582407.1 GspH/FimT family pseudopilin Machinery gene

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35508.38 Da        Isoelectric Point: 8.7057

>NTDB_id=47961 NMBM01240149_RS06865 WP_014582408.1 1343874..1344842(-) (pilJ) [Neisseria meningitidis M01-240149]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVVSDVPQKNRLFSLKGSSANKLIPNGTDNKLIPITESLDINYQNFFQVGSALIFQYGIDDVNASAATTV
VSSCAAISKPGKQILTLENVKKELKISDQDKEQNGNIARQRHVVNAYAVGRIAGEEGLFRFQLDDKGKWGNPQLLAKKIR
YMKVRYIYVSDCPEDDDAGKEETFRYTDKFNSAQDAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNVCANR
TL

Nucleotide


Download         Length: 969 bp        

>NTDB_id=47961 NMBM01240149_RS06865 WP_014582408.1 1343874..1344842(-) (pilJ) [Neisseria meningitidis M01-240149]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACGTCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCTATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTGTTTCCGATGTGCCGCAAAAAAACCGTCTTTTTTCCTTAAAAGG
GAGCAGTGCAAATAAACTTATCCCCAACGGTACAGATAATAAACTTATCCCCATAACGGAATCTTTAGATATCAATTATC
AGAATTTTTTCCAGGTTGGTAGCGCATTGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCGCCGCGACTACCGTC
GTCAGCAGCTGTGCCGCAATATCGAAACCGGGCAAGCAAATCCTTACTTTAGAAAATGTAAAAAAAGAATTGAAGATTTC
GGATCAGGATAAGGAGCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCG
GTGAGGAAGGTTTGTTCCGCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGATTAGA
TATATGAAAGTGCGGTATATCTATGTTTCCGACTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAGATATAC
GGATAAATTCAACAGCGCCCAAGATGCTGTTACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGA
TTGCCGCTTCTTCAGACAATCATATTTATGCTTACCGTATCGATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGA
ACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

82.919

100

0.829

Multiple sequence alignment