Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   J4A01_RS08605 Genome accession   NZ_CP071932
Coordinates   1706488..1708362 (+) Length   624 a.a.
NCBI ID   WP_032874953.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain CAS02     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1701488..1713362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4A01_RS08590 (J4A01_08510) ymcA 1702539..1702970 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  J4A01_RS08595 (J4A01_08515) cotE 1703223..1703768 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  J4A01_RS08600 (J4A01_08520) hexA 1703887..1706472 (+) 2586 WP_032875230.1 DNA mismatch repair protein MutS Machinery gene
  J4A01_RS08605 (J4A01_08525) hexB 1706488..1708362 (+) 1875 WP_032874953.1 DNA mismatch repair endonuclease MutL Machinery gene
  J4A01_RS08610 (J4A01_08530) - 1708761..1708970 (-) 210 WP_032874955.1 hypothetical protein -
  J4A01_RS08615 (J4A01_08535) - 1709900..1710577 (+) 678 WP_032874957.1 MBL fold metallo-hydrolase -
  J4A01_RS08620 (J4A01_08540) fabD 1710892..1711761 (+) 870 WP_032874959.1 ACP S-malonyltransferase -
  J4A01_RS08625 (J4A01_08545) - 1711898..1712872 (+) 975 WP_032874961.1 acyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 624 a.a.        Molecular weight: 70151.47 Da        Isoelectric Point: 6.0949

>NTDB_id=479604 J4A01_RS08605 WP_032874953.1 1706488..1708362(+) (hexB) [Bacillus amyloliquefaciens strain CAS02]
MAKVIQLSDELSNKIAAGEVVERPASVVKELVENAIDANSKVIEIDIEEAGLSSIRVLDNGEGMETDDCKRAFRRHATSK
IKDENDLFRVRTLGFRGEALPSIASVSHLEIKTSIGEGAGTHLILQGGNIISEQKSSSRKGTEIIVTNLFFNTPARLKYM
KTVHTELGNITDVVNRIALAHPEVSIRLRHQGKNLLQTNGNGDVRHVLAAIYGTAVAKKMIPLHVSSLDFEVKGYIALPE
ITRASRNYMSSVINGRYIKNFPLVKAVHEGYHTLLPIGRHPITFIEITMDPILVDVNVHPSKLEVRLSKETELHELIRDG
IKEVFQKQRLIPSAQLPKKSAPAPAKNEQQFMTFEESAPERKLPEKTPEPSYSPMKLSSVVKEPEPLIIEEEILPNEADH
GVPPELGMPETAAPVSDIPEPEAVSEEIREERVPVMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGQVE
PEVQDMIVPLTFHYAANEALIIDQHQHELESVGVFLEAFGTNSYIVRCHPAWFPKGEEAELIEEIIQQVLDAKQIDIKKL
REEAAIMMSCKGSIKANRHLRNDEIKALLDDLRRTTDPFTCPHGRPIIIHHSTYEMEKMFKRVM

Nucleotide


Download         Length: 1875 bp        

>NTDB_id=479604 J4A01_RS08605 WP_032874953.1 1706488..1708362(+) (hexB) [Bacillus amyloliquefaciens strain CAS02]
TTGGCAAAAGTCATCCAGCTGTCAGATGAACTTTCAAATAAAATAGCGGCCGGCGAGGTGGTCGAACGGCCTGCCTCAGT
CGTTAAAGAATTGGTGGAAAACGCCATCGACGCAAACAGCAAAGTCATTGAAATCGACATAGAGGAAGCGGGGCTTTCGT
CGATTCGGGTGCTCGATAACGGCGAAGGGATGGAAACCGATGATTGCAAGCGGGCTTTCCGCCGCCACGCGACCAGTAAA
ATCAAAGATGAAAACGACCTGTTCCGGGTGAGAACCCTCGGTTTCCGCGGAGAAGCTTTGCCAAGTATCGCGTCTGTTTC
TCATCTGGAAATCAAAACGAGCATCGGCGAGGGAGCGGGAACCCATCTCATTCTTCAGGGCGGGAATATCATTTCTGAAC
AGAAATCCTCCAGCAGAAAAGGAACGGAGATTATCGTTACCAACCTGTTTTTCAATACACCCGCCAGGTTGAAATATATG
AAAACCGTGCATACGGAGCTCGGCAATATTACGGATGTTGTCAACCGGATCGCTCTTGCGCATCCGGAAGTATCGATCCG
TCTCCGTCATCAGGGGAAAAATCTGCTGCAGACAAACGGTAACGGGGACGTGCGCCATGTGCTGGCCGCAATTTACGGGA
CGGCGGTTGCGAAAAAAATGATACCGCTCCATGTCAGCTCGCTTGATTTTGAAGTCAAGGGCTACATTGCGCTTCCGGAA
ATCACGCGTGCATCCAGAAACTACATGTCATCTGTCATTAACGGAAGATACATTAAGAATTTCCCGCTTGTAAAAGCGGT
GCATGAGGGCTATCACACACTTCTGCCGATCGGCCGCCATCCGATTACGTTTATCGAAATTACGATGGACCCGATTTTGG
TTGATGTCAATGTCCATCCGTCGAAGCTTGAAGTCCGCCTCAGCAAAGAGACGGAGCTGCATGAGCTGATCCGTGACGGG
ATAAAGGAAGTGTTTCAAAAGCAGCGGCTTATTCCGAGCGCCCAGCTCCCGAAAAAATCAGCGCCGGCACCGGCCAAAAA
CGAACAGCAATTTATGACATTTGAGGAAAGCGCGCCTGAGCGGAAACTTCCTGAAAAAACGCCGGAGCCGTCTTACTCAC
CAATGAAGCTGAGTTCGGTCGTAAAAGAGCCTGAGCCGCTAATAATAGAAGAAGAAATCCTCCCGAATGAAGCGGATCAC
GGAGTGCCGCCGGAGCTCGGTATGCCCGAAACGGCAGCGCCTGTTTCAGATATTCCGGAACCGGAAGCTGTCTCTGAAGA
AATACGGGAAGAAAGAGTTCCGGTGATGTATCCGATCGGCCAAATGCACGGGACATATATTTTAGCCCAAAACGAAAACG
GCTTGTATATCATTGACCAGCATGCGGCACAAGAACGGATTAAATACGAATATTTCCGGGAGAAAGTCGGGCAGGTCGAG
CCTGAAGTGCAGGATATGATCGTGCCGCTCACCTTTCATTACGCGGCAAATGAAGCGCTGATCATTGACCAGCATCAGCA
TGAGCTTGAAAGCGTCGGAGTATTTTTAGAAGCATTCGGCACGAACAGCTACATCGTCCGCTGCCATCCTGCCTGGTTTC
CAAAAGGGGAAGAAGCTGAACTGATTGAAGAAATCATTCAGCAGGTGCTTGACGCCAAACAGATCGATATTAAAAAACTG
CGGGAGGAAGCGGCCATTATGATGAGCTGCAAAGGCTCAATCAAAGCGAACCGGCATTTGCGCAACGACGAAATCAAAGC
GCTCTTGGACGACCTGCGCCGAACGACAGACCCGTTCACATGCCCGCACGGCCGGCCGATCATTATCCACCACAGCACGT
ATGAGATGGAGAAGATGTTTAAGCGTGTGATGTAA

Domains

Predicted by InterProScan.

MutL C terminal dimerisation domain (MutL_C)

(439-580)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(25-111)

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(209-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

46.594

100

0.482