Detailed information NTG0479550

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: J4A01_RS02310
• Genome accession: NZ_CP071932
• Coordinates: 457842..458972 (+)
• Length: 376 a.a.
• NCBI ID: WP_032872953.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain CAS02
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 452842..463972

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4A01_RS02285 (J4A01_02270)	-	453175..453619 (+)	445	Protein_410	NUDIX hydrolase	-
J4A01_RS02290 (J4A01_02275)	-	453677..455398 (+)	1722	WP_014304370.1	pyruvate oxidase	-
J4A01_RS19505 (J4A01_02285)	-	455812..456072 (+)	261	Protein_412	peptidoglycan-binding domain-containing protein	-
J4A01_RS02300 (J4A01_02290)	-	456108..456665 (-)	558	WP_032872951.1	hypothetical protein	-
J4A01_RS02305 (J4A01_02295)	-	456729..457178 (-)	450	WP_049589365.1	hypothetical protein	-
J4A01_RS02310 (J4A01_02300)	rapC	457842..458972 (+)	1131	WP_032872953.1	Rap family tetratricopeptide repeat protein	Regulator
J4A01_RS02315	-	458972..459106 (+)	135	WP_255322095.1	hypothetical protein	-
J4A01_RS02320	-	459499..459729 (-)	231	WP_032872955.1	hypothetical protein	-
J4A01_RS02330 (J4A01_02305)	-	460110..460667 (-)	558	WP_032872960.1	hypothetical protein	-
J4A01_RS02335 (J4A01_02310)	-	460763..461341 (-)	579	WP_171006740.1	hypothetical protein	-
J4A01_RS02340 (J4A01_02315)	-	461565..461831 (-)	267	WP_007609521.1	hypothetical protein	-
J4A01_RS02345 (J4A01_02320)	-	461937..463214 (-)	1278	WP_087920751.1	Nramp family divalent metal transporter	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44582.00 Da
• Isoelectric Point: 5.5572

>NTDB_id=479550 J4A01_RS02310 WP_032872953.1 457842..458972(+) (rapC) [Bacillus amyloliquefaciens strain CAS02]
MDQVLPSSQVGVKINEWYKMIRQFSVPDAEILKAEVEQEIEEMEEDQDLLVFYSLMCFRHQLMLDSLEPEDRYRDRPTVD
ELLEKIEKPQKRLTGLLKYYSLFFRGMYEFDHKEYVEAISYYRKAERELNAVSDEMEQAEFHYKIADAYYQIDQHFVSLN
HLKKAKQLFEKSQLYKVKVIGCNMMVGANMYDMYRLTEAESYYREALSIARGLDEEKVKRIIGVIFHNLGLVYLRGKNLI
AAEENFKKAIDVKEHIDTVYGVRSLYMMANVLYQCDKAKEARFFYETALNRARTSNEEEYLAKLKIINSLYEEYNETAVK
QSLGYLEGKRLWSDFAELTEKLGDFHFEKRNYAEGRNFLKKTIHAQTQILKVTEAI

Nucleotide

• Length: 1131 bp

>NTDB_id=479550 J4A01_RS02310 WP_032872953.1 457842..458972(+) (rapC) [Bacillus amyloliquefaciens strain CAS02]
ATGGATCAAGTTTTGCCGTCGTCCCAAGTTGGTGTCAAGATCAATGAATGGTACAAAATGATTCGCCAGTTCAGTGTGCC
TGATGCTGAGATTTTAAAGGCTGAAGTAGAACAGGAAATAGAGGAGATGGAAGAGGATCAGGATTTGCTTGTCTTTTATT
CATTGATGTGCTTTCGTCACCAATTGATGTTAGATTCCTTGGAGCCGGAAGACAGATATAGAGATCGCCCTACAGTCGAC
GAACTGCTTGAAAAAATAGAAAAACCACAAAAAAGACTTACAGGCCTCTTGAAATATTACTCATTGTTTTTTCGTGGAAT
GTATGAATTTGATCATAAAGAGTATGTTGAAGCGATAAGCTATTATCGCAAAGCAGAGAGAGAGTTGAATGCTGTATCAG
ATGAAATGGAGCAAGCTGAATTTCATTACAAAATAGCTGATGCCTATTATCAAATTGATCAGCACTTTGTTTCCCTCAAT
CATTTAAAAAAAGCCAAGCAATTGTTTGAAAAAAGTCAACTATACAAAGTGAAAGTGATTGGCTGTAATATGATGGTCGG
TGCTAACATGTACGATATGTACAGGCTGACGGAGGCAGAATCATATTATCGGGAAGCATTAAGTATCGCCCGTGGCTTGG
ATGAGGAAAAAGTGAAAAGAATTATCGGAGTGATCTTTCATAACTTAGGCTTAGTTTATTTAAGAGGGAAAAATTTGATT
GCTGCTGAAGAGAATTTCAAAAAGGCAATAGACGTGAAAGAACATATTGATACAGTGTATGGAGTGAGATCATTATATAT
GATGGCGAATGTCCTGTACCAATGTGATAAAGCCAAGGAAGCACGTTTCTTTTATGAAACGGCTCTAAATCGTGCTCGGA
CTTCTAATGAAGAAGAATATTTGGCTAAATTAAAAATCATTAATTCATTATACGAAGAATATAATGAAACAGCAGTGAAA
CAAAGCTTAGGCTACTTAGAAGGGAAACGCCTTTGGTCTGATTTCGCAGAGCTGACTGAAAAATTAGGTGACTTTCATTT
TGAGAAGAGAAACTATGCAGAGGGAAGAAACTTTTTAAAGAAAACCATACACGCCCAAACACAAATACTTAAGGTTACGG
AGGCTATATAA

Domains

Predicted by InterProScan.

• MalT-like TPR region (TPR_MalT) (145-296)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	37.534	99.202	0.372