Detailed information NTG0479538

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: J4A01_RS01555
• Genome accession: NZ_CP071932
• Coordinates: 280194..281315 (+)
• Length: 373 a.a.
• NCBI ID: WP_032872747.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain CAS02
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 275194..286315

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4A01_RS01535 (J4A01_01525)	-	275503..276498 (-)	996	WP_032872739.1	DUF5105 domain-containing protein	-
J4A01_RS01540 (J4A01_01530)	-	276625..278025 (+)	1401	WP_032872741.1	YcdB/YcdC domain-containing protein	-
J4A01_RS01545 (J4A01_01535)	-	278226..279584 (+)	1359	WP_032872743.1	YcdB/YcdC domain-containing protein	-
J4A01_RS01550 (J4A01_01540)	-	279581..280084 (-)	504	WP_032872745.1	M15 family metallopeptidase	-
J4A01_RS01555 (J4A01_01545)	rapF	280194..281315 (+)	1122	WP_032872747.1	tetratricopeptide repeat protein	Regulator
J4A01_RS01560 (J4A01_01550)	-	281432..282211 (+)	780	WP_032872749.1	glucose 1-dehydrogenase	-
J4A01_RS01565 (J4A01_01555)	-	282295..283974 (+)	1680	WP_032872751.1	glycoside hydrolase family 13 protein	-
J4A01_RS01570 (J4A01_01560)	-	284159..285118 (+)	960	WP_032872825.1	metal ABC transporter substrate-binding protein	-
J4A01_RS01575 (J4A01_01565)	-	285173..285868 (+)	696	WP_021495283.1	metal ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44319.55 Da
• Isoelectric Point: 5.1691

>NTDB_id=479538 J4A01_RS01555 WP_032872747.1 280194..281315(+) (rapF) [Bacillus amyloliquefaciens strain CAS02]
MKSKIPSEEVAVKMNEWYKLIRAFEADKAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYMTKFRLIKELYQGEGGQDSLKEY
FDVLESKELLADTEELLQDAAHFFHKRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=479538 J4A01_RS01555 WP_032872747.1 280194..281315(+) (rapF) [Bacillus amyloliquefaciens strain CAS02]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TAAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAGAACCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTCGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGGCAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGCTGGAATACCTCGAATGCGCCTTGGAACACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCTGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACACA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCTGCGGAGTGGGAAG
ATGAGATCTATATGACGAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACGTTCTGGAATCAAAAGAGCTGTTGGCTGACACGGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATAAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (187-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.588	99.464	0.424
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402