Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   IBC04_RS05350 Genome accession   NZ_CP061020
Coordinates   1023001..1023813 (-) Length   270 a.a.
NCBI ID   WP_011681204.1    Uniprot ID   A0AAP2RND8
Organism   Streptococcus thermophilus strain 24740     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1018001..1028813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBC04_RS05325 (IBC04_05345) - 1018939..1019325 (-) 387 WP_002953113.1 DUF1934 domain-containing protein -
  IBC04_RS05330 (IBC04_05350) - 1019383..1020295 (-) 913 Protein_1009 GNAT family N-acetyltransferase -
  IBC04_RS05335 (IBC04_05355) yidA 1020503..1021312 (+) 810 WP_011226081.1 sugar-phosphatase -
  IBC04_RS05340 (IBC04_05360) - 1021314..1022528 (+) 1215 WP_002953123.1 aminoacyltransferase -
  IBC04_RS05345 (IBC04_05365) - 1022580..1022941 (-) 362 Protein_1012 YbaN family protein -
  IBC04_RS05350 (IBC04_05370) vicX 1023001..1023813 (-) 813 WP_011681204.1 MBL fold metallo-hydrolase Regulator
  IBC04_RS05355 (IBC04_05375) vicK 1023819..1025159 (-) 1341 WP_011681205.1 cell wall metabolism sensor histidine kinase VicK Regulator
  IBC04_RS05360 (IBC04_05380) vicR 1025152..1025859 (-) 708 WP_011681206.1 response regulator YycF Regulator
  IBC04_RS05365 (IBC04_05385) - 1026386..1027153 (+) 768 WP_011681207.1 amino acid ABC transporter ATP-binding protein -
  IBC04_RS05370 (IBC04_05390) - 1027165..1027998 (+) 834 WP_011681208.1 transporter substrate-binding domain-containing protein -
  IBC04_RS05375 (IBC04_05395) - 1028016..1028714 (+) 699 WP_011681209.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30045.01 Da        Isoelectric Point: 5.5779

>NTDB_id=479531 IBC04_RS05350 WP_011681204.1 1023001..1023813(-) (vicX) [Streptococcus thermophilus strain 24740]
MTSELGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGM
DIYANEKTWQIMDSKNMLGKVDNSQKHIFSRGKLLTFGDIDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMA
GLIENADGYLIESNHDIEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAYMTME
NQLARADFGVGTDFKIFGTSPDTATPLTDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=479531 IBC04_RS05350 WP_011681204.1 1023001..1023813(-) (vicX) [Streptococcus thermophilus strain 24740]
ATGACCTCAGAATTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACCGGGAATTCCTTTTATTTGGAAACTCCAGA
AAAGAAGATTCTAGTGGATGCTGGTTTATCAGGAAAAAAAATTACAAGTTTGCTAGCGGAGATTGACCGTGATCCAAGTG
ATCTTGATGCTATCTTAGTAACACATGAACACAAGGACCATATCCATGGTGTAGGTGTTTTAGCTCGTAAATACGGCATG
GATATATACGCCAATGAGAAAACCTGGCAAATTATGGATAGTAAGAATATGCTAGGTAAGGTTGATAATAGTCAGAAACA
TATTTTTTCTCGCGGTAAGCTTCTAACCTTTGGTGATATCGACATTGAATCTTTCGGAGTTAGTCATGATGCCATTGATC
CACAATTTTACCGCTTTATGAAAGACGGAAAGAGCTTTGTCATGTTGACGGATACAGGCTATGTTTCAGACCGTATGGCT
GGTCTTATTGAAAATGCTGATGGCTATCTGATTGAATCTAATCATGATATTGAAATCTTGAGAGCAGGTTCTTATCCTTG
GTCAACCAAGCAACGTATCCTCTCTGATCAGGGTCACTTGTGTAATGAGGATGGAGCCGATGCTATGATTCGTACCATCG
GTAATAAAACTAAAAAGATTTATCTGGGTCACCTTTCTAAAGAAAATAATATCAAGGAATTGGCCTACATGACGATGGAA
AATCAGTTGGCTCGCGCTGACTTTGGTGTTGGAACTGACTTTAAGATTTTTGGTACCTCACCAGATACGGCGACCCCACT
AACAGATATTTAG

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.985

99.259

0.774