Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IAG39_RS12235 Genome accession   NZ_CP061008
Coordinates   2603312..2604673 (+) Length   453 a.a.
NCBI ID   WP_059379903.1    Uniprot ID   -
Organism   Achromobacter xylosoxidans strain GD03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2598312..2609673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAG39_RS12215 (IAG39_12215) hpaE 2599345..2600811 (+) 1467 WP_118932811.1 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase -
  IAG39_RS12220 (IAG39_12220) hpaD 2600849..2601700 (+) 852 WP_059379906.1 3,4-dihydroxyphenylacetate 2,3-dioxygenase -
  IAG39_RS12225 (IAG39_12225) hpaR 2601701..2602165 (-) 465 WP_118932812.1 homoprotocatechuate degradation operon regulator HpaR -
  IAG39_RS12230 (IAG39_12230) - 2602264..2602896 (-) 633 WP_118932813.1 hypothetical protein -
  IAG39_RS12235 (IAG39_12235) radA 2603312..2604673 (+) 1362 WP_059379903.1 DNA repair protein RadA Machinery gene
  IAG39_RS12240 (IAG39_12240) - 2604758..2605537 (+) 780 WP_059379902.1 sulfite exporter TauE/SafE family protein -
  IAG39_RS12245 (IAG39_12245) - 2605700..2605939 (+) 240 WP_118932814.1 hypothetical protein -
  IAG39_RS12250 (IAG39_12250) - 2606087..2607043 (-) 957 WP_059379901.1 2-hydroxyacid dehydrogenase -
  IAG39_RS12255 (IAG39_12255) - 2607147..2608133 (-) 987 WP_059379900.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  IAG39_RS12260 (IAG39_12260) - 2608208..2609221 (-) 1014 WP_059379979.1 Bug family tripartite tricarboxylate transporter substrate binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48147.24 Da        Isoelectric Point: 6.9552

>NTDB_id=479438 IAG39_RS12235 WP_059379903.1 2603312..2604673(+) (radA) [Achromobacter xylosoxidans strain GD03]
MAKSRTVYVCSDCGGTTPKWQGKCPHCNAWNTLEETVESSAPAAASHRYAPLAAASPVRSLSEIEARETPRQPTGLEEFD
RVLGGGLVAGAVVLIGGDPGIGKSTLLLQALASLSEVTNVLYVTGEESAEQVALRARRLGLQTGNVNLLAEIRLESIQAA
VSEQKPTVAVIDSIQTLYSGELTAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHEQQVAGSCVMATQEGTRPLLVEIQALVDSSHAPN
PRRLTVGLEGNRLAMLLAVLHRHAGVSTFDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDKPLPRGLIAFGEVGLAGE
IRPAPRGQERLREAAKLGFSIALIPKANAPRQPIEGLEIWAVDRLDAALDKLR

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=479438 IAG39_RS12235 WP_059379903.1 2603312..2604673(+) (radA) [Achromobacter xylosoxidans strain GD03]
ATGGCCAAATCCCGAACCGTATACGTGTGCTCCGATTGCGGCGGCACCACCCCGAAGTGGCAGGGCAAATGCCCGCATTG
CAACGCCTGGAACACGCTGGAAGAAACCGTGGAGTCGTCGGCGCCGGCCGCCGCCTCCCACCGCTATGCGCCGCTGGCGG
CCGCCAGCCCGGTGCGCAGCCTGTCTGAAATCGAAGCCCGCGAAACCCCGCGCCAGCCTACCGGGCTGGAAGAGTTCGAC
CGCGTGCTGGGCGGCGGCCTGGTGGCCGGCGCCGTGGTGCTGATCGGCGGCGACCCCGGCATAGGCAAGTCCACCTTGCT
GCTGCAGGCGCTGGCTTCGCTGTCCGAAGTCACCAACGTGCTGTACGTGACGGGCGAGGAATCCGCCGAACAGGTCGCCC
TGCGCGCGCGCCGCCTGGGCCTGCAGACGGGCAACGTCAATCTGCTGGCCGAGATCCGGCTGGAGTCGATCCAGGCGGCG
GTGTCGGAGCAGAAGCCCACCGTGGCGGTGATCGACTCGATCCAGACCCTGTACAGCGGCGAACTGACCGCGGCGCCGGG
GTCGGTGTCGCAGGTGCGCGAATGCGCGGCCCAGCTCACGCGCCTGGCCAAGCAGACGGGCATCGCCATCGTCATGATCG
GCCATGTCACCAAGGACGGCGCGCTGGCCGGGCCGCGGGTGCTGGAGCACATCGTGGACACCGTGCTGTATTTCGAGGGC
GACACGCACTCCTCGTTCCGCCTGGTGCGCGCCTTCAAGAACCGTTTCGGCGCGGTCAATGAACTGGGCGTCTTCGCCAT
GACGGACCGCGGGCTGCGCGGCGTGGCCAATCCCTCCGCGCTGTTCCTGTCGCAGCATGAACAGCAGGTCGCGGGATCCT
GCGTGATGGCCACGCAGGAAGGCACGCGTCCGCTATTGGTGGAGATCCAGGCGCTGGTGGATAGTTCGCACGCGCCCAAC
CCGCGCCGGCTCACAGTCGGCCTGGAAGGCAACCGCCTGGCGATGCTGTTGGCGGTGCTGCACCGGCATGCCGGCGTTTC
CACCTTTGACCAGGACGTGTTCGTCAACGCGGTGGGCGGCGTGCGCATCACGGAACCCGCGGCCGACCTGCCGGTGCTGC
TGGCCATCATGTCCTCGCTGCGCGACAAGCCGCTGCCGCGCGGCCTGATCGCTTTCGGCGAAGTCGGCCTGGCGGGTGAG
ATCCGGCCCGCGCCGCGCGGACAGGAACGCTTGCGCGAAGCGGCCAAGCTGGGCTTTTCGATCGCGCTGATCCCCAAGGC
CAACGCGCCGCGCCAGCCCATCGAAGGGCTGGAGATCTGGGCGGTGGACCGGCTGGACGCCGCGCTGGACAAGTTGCGCT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.219

100

0.506
  radA Streptococcus mitis NCTC 12261

47.02

100

0.47
  radA Streptococcus pneumoniae D39

49.296

94.04

0.464
  radA Streptococcus pneumoniae TIGR4

49.296

94.04

0.464
  radA Streptococcus mitis SK321

49.296

94.04

0.464
  radA Streptococcus pneumoniae R6

49.296

94.04

0.464
  radA Streptococcus pneumoniae Rx1

49.296

94.04

0.464