Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   IAG39_RS04710 Genome accession   NZ_CP061008
Coordinates   1031576..1032523 (+) Length   315 a.a.
NCBI ID   WP_410469170.1    Uniprot ID   -
Organism   Achromobacter xylosoxidans strain GD03     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1026576..1037523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAG39_RS04685 (IAG39_04685) - 1028011..1028397 (+) 387 WP_118931357.1 MOSC N-terminal beta barrel domain-containing protein -
  IAG39_RS04690 (IAG39_04690) - 1028420..1029643 (-) 1224 WP_059371358.1 benzoate/H(+) symporter BenE family transporter -
  IAG39_RS04695 (IAG39_04695) - 1029640..1029891 (-) 252 WP_042795127.1 YfhL family 4Fe-4S dicluster ferredoxin -
  IAG39_RS04700 (IAG39_04700) coaD 1030020..1030523 (-) 504 WP_013396175.1 pantetheine-phosphate adenylyltransferase -
  IAG39_RS04705 (IAG39_04705) rsmD 1030582..1031148 (-) 567 WP_118931432.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  IAG39_RS04710 (IAG39_04710) pilA 1031576..1032523 (+) 948 WP_410469170.1 signal recognition particle-docking protein FtsY Machinery gene
  IAG39_RS04715 (IAG39_04715) - 1032602..1034260 (-) 1659 WP_059371360.1 CYTH and CHAD domain-containing protein -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 33202.28 Da        Isoelectric Point: 8.5379

>NTDB_id=479434 IAG39_RS04710 WP_410469170.1 1031576..1032523(+) (pilA) [Achromobacter xylosoxidans strain GD03]
MPAVEPAAEAPKKASWLSRLKQGLSRTGQSIGGIFIGVKVDENLFEELESALIMADAGLEATEKLLTALRARVKKERIED
PAKVKAALRQLLADHLRPLERAFDLKRTQPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQLIEW
GSRNNVTVISQDGGDPAAVAFDAVNAGRARGMGVVMVDTAGRLPTQLHLMEELKKIRRVIGKADAAAPHEVLLVVDGNTG
QNALAQIRAFDAAINLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGESLEDLQPFVADEFAGALLAD

Nucleotide


Download         Length: 948 bp        

>NTDB_id=479434 IAG39_RS04710 WP_410469170.1 1031576..1032523(+) (pilA) [Achromobacter xylosoxidans strain GD03]
ATGCCCGCCGTCGAGCCCGCCGCTGAAGCCCCCAAGAAGGCTTCCTGGCTGTCCCGCCTGAAGCAAGGCCTGTCGCGTAC
GGGCCAGAGCATCGGCGGCATCTTCATCGGCGTGAAGGTCGACGAGAACCTGTTCGAGGAACTCGAATCGGCGCTCATTA
TGGCCGATGCGGGCCTGGAGGCTACCGAAAAGCTCCTGACCGCGCTGCGCGCGCGAGTCAAGAAAGAACGCATCGAAGAC
CCTGCCAAGGTCAAGGCGGCGCTGCGCCAGTTGCTGGCCGACCACCTGCGTCCGCTGGAGCGCGCCTTCGATCTGAAGCG
CACGCAACCCCTGGTCGTCATGATCGCCGGCGTCAACGGCGCCGGCAAGACCACTTCCATCGGCAAGCTGGCCCACACCT
TCCAGCGCCAGGGGGCCAGTGTGCTGCTGGCCGCGGGCGACACCTTCCGCGCCGCCGCGCGCGAGCAGCTCATCGAATGG
GGTAGCCGCAACAACGTGACGGTGATCTCGCAGGACGGCGGCGATCCGGCAGCTGTCGCTTTCGATGCCGTCAATGCCGG
TCGCGCGCGCGGCATGGGCGTGGTGATGGTGGATACCGCAGGCCGCCTGCCCACGCAGCTGCACCTGATGGAAGAGCTGA
AGAAGATCCGCCGCGTCATCGGCAAGGCGGATGCCGCCGCGCCGCACGAGGTGCTGCTGGTGGTGGACGGCAATACCGGC
CAGAACGCCTTGGCGCAGATCCGCGCCTTCGATGCCGCCATCAATCTGACCGGCCTGGTCGTGACCAAGCTGGACGGCAC
CGCCAAGGGCGGCACGTTGGCCGCCGTGGCCGCGGGTAGCCAGGGCGTGCGCCCGATCCCGGTGTACTGGATCGGCGTGG
GCGAAAGCCTGGAAGACCTGCAGCCCTTCGTGGCCGACGAATTTGCCGGGGCTTTGCTGGCGGATTGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(30-90)

SRP54-type protein, GTPase domain (SRP54)

(111-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

58.497

97.143

0.568