Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   IAG39_RS00610 Genome accession   NZ_CP061008
Coordinates   126512..127957 (+) Length   481 a.a.
NCBI ID   WP_118934761.1    Uniprot ID   -
Organism   Achromobacter xylosoxidans strain GD03     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 121512..132957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAG39_RS00595 (IAG39_00595) - 122269..123597 (+) 1329 WP_118934766.1 amidase -
  IAG39_RS00600 (IAG39_00600) leuA 123664..125376 (-) 1713 WP_054455581.1 2-isopropylmalate synthase -
  IAG39_RS00605 (IAG39_00605) - 125896..126513 (-) 618 WP_118934763.1 hypothetical protein -
  IAG39_RS00610 (IAG39_00610) rpoN/rpoN1 126512..127957 (+) 1446 WP_118934761.1 RNA polymerase factor sigma-54 Machinery gene
  IAG39_RS00615 (IAG39_00615) - 128091..128372 (+) 282 WP_054455575.1 bacterioferritin-associated ferredoxin -
  IAG39_RS00620 (IAG39_00620) - 128403..129260 (-) 858 WP_059376701.1 LysR substrate-binding domain-containing protein -
  IAG39_RS00625 (IAG39_00625) - 129389..130303 (+) 915 WP_118934759.1 DMT family transporter -
  IAG39_RS00630 (IAG39_00630) bfr 130670..131146 (+) 477 WP_013390908.1 bacterioferritin -
  IAG39_RS00635 (IAG39_00635) - 131228..131914 (-) 687 WP_187524009.1 hypothetical protein -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 52440.75 Da        Isoelectric Point: 4.7991

>NTDB_id=479432 IAG39_RS00610 WP_118934761.1 126512..127957(+) (rpoN/rpoN1) [Achromobacter xylosoxidans strain GD03]
MQNIVPMTRPILELRPGQHLTLTPQLQQSIRLLQLSTLDLEAEISQVLAENPLLERQDEAPSAEAPAESDRESSVQDDEP
AAERETPVDEMPGSGGVYPDEDSSRPEAARPDTLREHLLGQLMLTRAAPRDAALAGLLIDELDENGYLGSPLEEILDWLP
PELEPDIDELKAALSLLQSFDPPGIGARDMAECLLLQLRNPDLDRLPEAADAAVLACARQICAQHLALLATGNAARLCAA
VGCDEATFRSAHALILRLEPRPGRAWTVPAADYAVPDVIVRKTRGGWQVTLNSAAVPKLQINGLYAQMLGNQKESAHAGL
QSQLQQARWMIRNVEQRFDTILRVAQAIVQHQTAFFSQGPAAMRPLILKDIAGELGLHESTISRATTQKYMLTPFGTLEL
KRFFGTGVSTDGGDATSATAVQTFIRQMVAEENRAKPLSDSQIMQKLADQGIVIARRTVAKYREALRIAPAALRKAQAAA
R

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=479432 IAG39_RS00610 WP_118934761.1 126512..127957(+) (rpoN/rpoN1) [Achromobacter xylosoxidans strain GD03]
ATGCAAAATATTGTACCTATGACCCGTCCAATTTTAGAACTGCGACCAGGTCAGCATTTGACGCTGACGCCACAACTACA
GCAATCGATCCGATTGTTGCAGCTGTCCACGCTCGACCTCGAAGCCGAGATTTCGCAGGTGCTGGCGGAGAACCCGCTGC
TGGAGCGGCAGGACGAAGCGCCGTCGGCCGAGGCGCCGGCCGAGTCCGACCGCGAATCCTCGGTGCAGGATGACGAGCCC
GCCGCCGAACGCGAGACGCCGGTGGACGAAATGCCGGGCTCGGGCGGGGTCTACCCCGACGAAGATTCCAGCCGCCCCGA
GGCCGCCCGGCCGGATACGCTGCGCGAACATCTGCTGGGCCAACTGATGCTGACGCGCGCCGCGCCGCGCGACGCTGCGC
TGGCCGGCCTCCTGATCGACGAACTGGACGAAAACGGCTACCTGGGATCGCCGCTGGAGGAAATCCTGGACTGGTTGCCG
CCCGAACTGGAACCGGACATCGACGAGCTGAAGGCGGCCCTGTCGCTGTTGCAGTCGTTCGATCCGCCCGGCATAGGCGC
GCGCGACATGGCGGAATGCCTGTTGTTGCAGCTACGCAACCCGGATCTGGATCGGCTGCCCGAAGCGGCGGACGCCGCGG
TCCTGGCTTGTGCCCGCCAGATCTGCGCGCAGCACCTCGCGCTGCTGGCGACGGGCAACGCCGCGCGCCTGTGCGCGGCC
GTGGGCTGCGATGAGGCCACGTTCCGCTCGGCCCACGCCCTCATCCTGCGCCTGGAGCCCCGCCCCGGGCGTGCCTGGAC
CGTGCCCGCGGCCGACTACGCGGTGCCGGACGTCATCGTGCGCAAGACGCGCGGCGGCTGGCAGGTCACCCTCAACAGCG
CCGCCGTGCCCAAGCTGCAGATCAACGGGCTGTACGCCCAGATGCTGGGCAACCAGAAGGAATCCGCGCATGCGGGGCTG
CAATCGCAGCTGCAGCAGGCCCGTTGGATGATCCGCAACGTGGAGCAGCGCTTCGACACCATCCTGCGCGTGGCCCAAGC
CATCGTGCAGCACCAGACGGCCTTCTTCAGCCAGGGGCCGGCCGCCATGCGGCCTCTCATCCTGAAGGACATCGCCGGTG
AGCTCGGTTTGCACGAATCCACCATTTCACGGGCCACAACACAGAAGTACATGCTCACTCCGTTTGGCACGCTGGAGCTC
AAGCGCTTCTTTGGTACGGGGGTTTCGACGGATGGCGGGGATGCCACCTCGGCCACGGCGGTGCAGACCTTCATCCGCCA
GATGGTGGCCGAAGAGAACCGGGCCAAGCCTTTGTCCGACAGCCAGATCATGCAAAAGCTGGCTGATCAGGGGATAGTCA
TCGCCCGAAGGACGGTGGCAAAGTACCGGGAAGCGCTGCGGATCGCCCCGGCGGCGTTGCGCAAGGCGCAGGCGGCAGCC
CGCTGA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(320-475)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(108-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

47.316

100

0.495