NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	H9Y09_RS04770	Genome accession	NZ_CP061002
Coordinates	1030970..1032328 (+)	Length	452 a.a.
NCBI ID	WP_021717359.1	Uniprot ID	-
Organism	Phascolarctobacterium faecium strain G104
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1025970..1037328

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H9Y09_RS04755 (H9Y09_04755)	-	1026513..1027688 (+)	1176	WP_021717356.1	FprA family A-type flavoprotein	-
H9Y09_RS04760 (H9Y09_04760)	-	1027870..1028283 (+)	414	WP_021717357.1	CtsR family transcriptional regulator	-
H9Y09_RS04765 (H9Y09_04765)	-	1028490..1030970 (+)	2481	WP_187771772.1	ATP-dependent Clp protease ATP-binding subunit	-
H9Y09_RS04770 (H9Y09_04770)	radA	1030970..1032328 (+)	1359	WP_021717359.1	DNA repair protein RadA	Machinery gene
H9Y09_RS04775 (H9Y09_04775)	-	1032506..1032985 (+)	480	WP_021717360.1	CarD family transcriptional regulator	-
H9Y09_RS04780 (H9Y09_04780)	-	1033095..1034219 (+)	1125	WP_021717361.1	PIN/TRAM domain-containing protein	-
H9Y09_RS04785 (H9Y09_04785)	ispD	1034231..1034941 (+)	711	WP_187771701.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H9Y09_RS04790 (H9Y09_04790)	ispF	1034938..1035441 (+)	504	WP_187771702.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H9Y09_RS04795 (H9Y09_04795)	gltX	1035588..1037060 (+)	1473	WP_021717364.1	glutamate--tRNA ligase	-

Sequence

Protein

Download Length: 452 a.a. Molecular weight: 48980.68 Da Isoelectric Point: 7.5393

                                >NTDB_id=479383 H9Y09_RS04770 WP_021717359.1 1030970..1032328(+) (radA) [Phascolarctobacterium faecium strain G104]

MAKPKIRFVCQSCGYVTAKWLGKCPECGQWDSFVEEMDVPERPGQSYLPVGETAKPKPLHQVAEQSLSRLQTGIREFDRV

LGGGIVPGSLVLLGGDPGIGKSTMLLDAGMKFSRNNIKVLYVSGEESEAQTAMRARRLGSSGENLLVMTATDLNIILLQA

QEVQPALLVIDSIQTMYNSELPTAAGSVGQVRECTAKLLRFAKTSGIAVLIIGHVTKDGNIAGPRLLEHMVDVVLQFEGD

RSYSFRVLRALKNRFGSTNESGIFSMEASGLQEISNPAGLFLEERSNDASGSVVCACLEGNRPILVEVQALVAKTPYGMP

RRTAVGFDYNRVTMLLAILERRLGMDFGAYDAYVNVVGGMRVTEPAADLAVAAALVSSYRNRPIPHGVLVMGEVGLTGEV

RRIGSPERRIKDAMNLGFKRFVLPMGKLSLDEPCNGIVQVKTLEEALDKVFA

Nucleotide

Download Length: 1359 bp

                                >NTDB_id=479383 H9Y09_RS04770 WP_021717359.1 1030970..1032328(+) (radA) [Phascolarctobacterium faecium strain G104]

ATGGCAAAACCGAAAATACGTTTCGTTTGTCAGTCGTGTGGTTATGTAACGGCTAAATGGTTGGGAAAGTGTCCGGAATG

TGGTCAATGGGACAGTTTTGTCGAAGAAATGGACGTGCCTGAACGTCCTGGACAGAGTTACCTGCCTGTAGGCGAAACCG

CTAAGCCCAAACCGTTGCATCAGGTGGCGGAACAGTCCCTCAGCCGTCTGCAGACAGGTATCCGTGAATTTGATCGTGTG

CTTGGGGGAGGGATTGTTCCCGGCAGCCTGGTTTTGTTGGGCGGAGACCCGGGCATTGGCAAGTCGACTATGCTTTTGGA

TGCCGGCATGAAGTTTAGCCGGAATAATATAAAAGTTTTGTATGTTTCTGGTGAAGAATCAGAAGCGCAAACAGCAATGC

GGGCGAGACGTTTAGGCAGCAGCGGTGAAAACCTGCTGGTGATGACGGCTACCGATTTGAATATTATTTTACTGCAGGCA

CAGGAAGTGCAGCCGGCATTGTTGGTAATTGATTCTATTCAGACTATGTACAACAGCGAGCTGCCTACTGCAGCCGGCAG

TGTCGGACAGGTGCGCGAGTGTACGGCGAAATTGCTGCGTTTTGCAAAAACCAGCGGCATTGCCGTGCTTATTATCGGTC

ATGTGACTAAAGACGGTAATATTGCTGGCCCGCGATTGCTTGAACATATGGTCGACGTGGTGCTGCAGTTTGAAGGGGAT

AGATCCTATTCTTTTCGGGTGCTGCGTGCCTTGAAAAACCGTTTTGGCTCTACAAATGAAAGCGGTATTTTTTCTATGGA

AGCCAGTGGGCTGCAGGAAATAAGTAATCCAGCAGGATTATTCCTGGAAGAACGCAGTAACGATGCTTCCGGTTCAGTTG

TTTGTGCTTGCCTGGAAGGTAACAGGCCTATTTTAGTTGAAGTGCAGGCTTTGGTTGCCAAAACACCTTATGGGATGCCC

CGACGCACTGCTGTTGGATTTGATTATAATCGGGTCACTATGCTTTTGGCGATTTTGGAACGGCGCTTAGGAATGGATTT

TGGCGCTTACGATGCTTACGTCAATGTGGTTGGCGGGATGAGAGTCACTGAACCAGCTGCAGATCTGGCTGTGGCTGCTG

CGCTGGTGTCCAGCTATCGTAATCGGCCGATTCCGCATGGCGTATTAGTCATGGGTGAAGTGGGGCTTACAGGAGAAGTG

CGACGAATAGGTTCGCCGGAAAGGCGTATCAAGGATGCTATGAATCTTGGCTTTAAAAGATTTGTTTTGCCAATGGGCAA

GCTGTCATTGGATGAACCCTGCAATGGTATTGTGCAGGTTAAAACTTTGGAAGAAGCGCTGGATAAGGTTTTTGCTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-219)

Subunit ChlI of Mg-chelatase (ChlI)

(323-425)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	51.656	100	0.518
radA	Streptococcus mitis NCTC 12261	50.22	100	0.504
radA	Streptococcus mitis SK321	50.22	100	0.504
radA	Streptococcus pneumoniae Rx1	50	100	0.502
radA	Streptococcus pneumoniae D39	50	100	0.502
radA	Streptococcus pneumoniae R6	50	100	0.502
radA	Streptococcus pneumoniae TIGR4	50	100	0.502

Detailed information NTG0479383