Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   IAG34_RS16000 Genome accession   NZ_CP060994
Coordinates   3263751..3264635 (-) Length   294 a.a.
NCBI ID   WP_024437029.1    Uniprot ID   A0A009TCU6
Organism   Acinetobacter baumannii strain CAb-65     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3258751..3269635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAG34_RS15985 (IAG34_15980) miaB 3260598..3262049 (+) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  IAG34_RS15990 (IAG34_15985) - 3262087..3263175 (+) 1089 WP_000122983.1 PhoH family protein -
  IAG34_RS15995 (IAG34_15990) ybeY 3263185..3263661 (+) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  IAG34_RS16000 (IAG34_15995) tonB2 3263751..3264635 (-) 885 WP_024437029.1 energy transducer TonB Machinery gene
  IAG34_RS16005 (IAG34_16000) - 3264866..3265537 (+) 672 WP_001193960.1 hypothetical protein -
  IAG34_RS16010 (IAG34_16005) - 3265694..3266407 (+) 714 WP_000201548.1 DUF3108 domain-containing protein -
  IAG34_RS16015 (IAG34_16010) - 3266480..3267055 (+) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  IAG34_RS16020 (IAG34_16015) wrbA 3267108..3267701 (-) 594 WP_001183361.1 NAD(P)H:quinone oxidoreductase -
  IAG34_RS16025 (IAG34_16020) - 3267989..3269236 (+) 1248 WP_000893466.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33649.60 Da        Isoelectric Point: 9.6000

>NTDB_id=479361 IAG34_RS16000 WP_024437029.1 3263751..3264635(-) (tonB2) [Acinetobacter baumannii strain CAb-65]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREVHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRKLKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=479361 IAG34_RS16000 WP_024437029.1 3263751..3264635(-) (tonB2) [Acinetobacter baumannii strain CAb-65]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTGATCAAGCATGCAGACTTTTTAGCCCAAGCTGATCAACAAGGTTCAGGGGCT
TTTCGGGAAGTTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAAAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCAGAGCTTCGTATCATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009TCU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.32

100

0.993