Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   J4Q30_RS00570 Genome accession   NZ_CP071917
Coordinates   80455..81816 (+) Length   453 a.a.
NCBI ID   WP_073076903.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 19A-19339     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 75455..86816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4Q30_RS11630 - 75478..75595 (+) 118 Protein_97 dihydrodipicolinate reductase -
  J4Q30_RS00515 (J4Q30_00515) - 75576..75779 (+) 204 WP_001091112.1 hypothetical protein -
  J4Q30_RS00520 (J4Q30_00520) - 75782..76132 (+) 351 WP_233959909.1 hypothetical protein -
  J4Q30_RS00525 (J4Q30_00525) - 76142..76558 (+) 417 WP_001165344.1 phage holin family protein -
  J4Q30_RS00530 (J4Q30_00530) - 76562..76897 (+) 336 WP_050200954.1 phage holin -
  J4Q30_RS00535 (J4Q30_00535) lytA 76900..77856 (+) 957 WP_233959910.1 N-acetylmuramoyl-L-alanine amidase LytA -
  J4Q30_RS00540 (J4Q30_00540) - 78076..78255 (-) 180 WP_001209433.1 hypothetical protein -
  J4Q30_RS00545 (J4Q30_00545) - 78397..78546 (-) 150 WP_001030863.1 hypothetical protein -
  J4Q30_RS00550 (J4Q30_00550) tadA 78827..79294 (+) 468 WP_000291879.1 tRNA adenosine(34) deaminase TadA -
  J4Q30_RS00560 (J4Q30_00560) - 79481..79924 (+) 444 WP_000701992.1 dUTP diphosphatase -
  J4Q30_RS00565 (J4Q30_00565) - 79926..80441 (+) 516 WP_000691236.1 histidine phosphatase family protein -
  J4Q30_RS00570 (J4Q30_00570) radA 80455..81816 (+) 1362 WP_073076903.1 DNA repair protein RadA Machinery gene
  J4Q30_RS00575 (J4Q30_00575) - 81889..82386 (+) 498 WP_001809263.1 carbonic anhydrase -
  J4Q30_RS00580 (J4Q30_00580) - 82411..83226 (+) 816 WP_000749768.1 PrsW family intramembrane metalloprotease -
  J4Q30_RS00585 (J4Q30_00585) - 83371..84339 (+) 969 WP_000010163.1 ribose-phosphate diphosphokinase -
  J4Q30_RS00590 (J4Q30_00590) - 84473..84754 (-) 282 Protein_112 ISL3 family transposase -
  J4Q30_RS00595 (J4Q30_00595) - 84882..85789 (-) 908 Protein_113 Rpn family recombination-promoting nuclease/putative transposase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49462.93 Da        Isoelectric Point: 6.1868

>NTDB_id=479286 J4Q30_RS00570 WP_073076903.1 80455..81816(+) (radA) [Streptococcus pneumoniae strain 19A-19339]
MAKKKATFVCQNCGYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVNRTKTEMEEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVE
RIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAK
RTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIR
RVNRIEQRINETAKLGFTKIYVPQNSLTGITLPKEIQVIGVTTIQEVLKKVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=479286 J4Q30_RS00570 WP_073076903.1 80455..81816(+) (radA) [Streptococcus pneumoniae strain 19A-19339]
ATCGCAAAGAAAAAAGCGACATTTGTATGTCAAAATTGTGGGTATAATTCCCCTAAATATCTGGGACGTTGCCCCAACTG
TGGGTCTTGGTCTTCTTTTGTGGAAGAGGTTGAGGTTGCCGAGGTCAAGAATGCGCGTGTGTCCTTGACAGGTGAGAAAA
CCAAGCCCATGAAACTAGCTGAGGTGACTTCCATCAATGTCAATCGAACCAAGACGGAGATGGAGGAATTCAACCGTGTG
CTTGGAGGCGGAGTGGTACCAGGAAGTCTCGTCCTCATCGGTGGGGATCCTGGGATTGGGAAATCAACTCTTCTCCTACA
AGTCTCAACCCAGTTGTCCCAAGTGGGGACAGTTCTCTATGTCAGTGGGGAGGAGTCTGCCCAGCAGATTAAACTACGTG
CAGAGCGCTTAGGTGATATTGATAGTGAGTTTTATCTCTATGCAGAGACCAATATGCAGAGTGTTCGTGCAGAAGTGGAG
CGTATCCAGCCAGACTTTCTCATTATTGATTCCATCCAGACCATCATGTCTCCTGAGATTTCAGGGGTGCAGGGGTCTGT
TTCTCAGGTACGTGAAGTGACCGCTGAACTCATGCAGTTGGCCAAGACCAATAACATTGCCATCTTTATCGTAGGTCATG
TGACCAAAGAAGGAACCTTGGCTGGGCCTCGTATGTTGGAGCATATGGTGGATACGGTGCTTTACTTTGAAGGGGAGCGT
CACCACACCTTTCGTATTTTGAGAGCGGTCAAAAATCGTTTTGGTTCCACTAATGAGATTGGGATTTTTGAGATGCAGTC
GGGCGGCTTGGTTGAGGTACTCAATCCGAGTCAAGTTTTCCTAGAAGAGCGTTTGGATGGGGCGACTGGTTCCTCCATCG
TTGTAACCATGGAAGGGACGCGTCCGATTTTGGCGGAGGTTCAGGCTTTGGTAACACCGACCATGTTTGGAAATGCCAAG
CGTACTACGACAGGACTTGATTTTAACCGTGCTAGCTTGATTATGGCTGTTTTGGAAAAACGGGCAGGGCTTCTCTTGCA
AAATCAGGATGCCTATCTCAAATCTGCTGGTGGTGTTAAATTGGATGAACCTGCCATTGACTTGGCTGTTGCAGTTGCTA
TTGCTTCGAGCTACAAAGACAAGCCAACTAATCCTCAGGAATGTTTTGTCGGAGAACTGGGCTTGACAGGAGAGATTCGG
CGCGTGAATCGTATTGAGCAACGCATCAACGAAACTGCTAAACTGGGCTTTACTAAGATTTATGTACCTCAGAATTCCTT
GACAGGAATCACTCTGCCTAAGGAAATTCAGGTCATTGGCGTGACAACGATTCAGGAAGTTTTGAAAAAGGTCTTTGCAT
AA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(63-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

99.558

100

0.996
  radA Streptococcus pneumoniae D39

99.558

100

0.996
  radA Streptococcus pneumoniae R6

99.558

100

0.996
  radA Streptococcus pneumoniae TIGR4

99.558

100

0.996
  radA Streptococcus mitis SK321

99.117

100

0.991
  radA Streptococcus mitis NCTC 12261

99.117

100

0.991
  radA/sms Bacillus subtilis subsp. subtilis str. 168

62.914

100

0.629