Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JZ789_RS11105 Genome accession   NZ_CP071806
Coordinates   2230119..2231489 (-) Length   456 a.a.
NCBI ID   WP_004298358.1    Uniprot ID   -
Organism   Streptococcus suis strain GX69     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2225119..2236489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZ789_RS11080 (JZ789_10995) - 2225878..2227158 (-) 1281 WP_024395763.1 MFS transporter -
  JZ789_RS11085 (JZ789_11000) - 2227250..2227909 (-) 660 WP_170244755.1 LiaF transmembrane domain-containing protein -
  JZ789_RS11090 (JZ789_11005) - 2227914..2228360 (-) 447 WP_013730630.1 LytTR family DNA-binding domain-containing protein -
  JZ789_RS11095 (JZ789_11010) - 2228538..2229296 (-) 759 WP_013730631.1 TIGR00266 family protein -
  JZ789_RS11100 (JZ789_11015) - 2229504..2229998 (-) 495 WP_013730632.1 carbonic anhydrase -
  JZ789_RS11105 (JZ789_11020) radA 2230119..2231489 (-) 1371 WP_004298358.1 DNA repair protein RadA Machinery gene
  JZ789_RS11110 (JZ789_11025) - 2231496..2232029 (-) 534 WP_004298356.1 histidine phosphatase family protein -
  JZ789_RS11115 (JZ789_11030) - 2232036..2232479 (-) 444 WP_004298354.1 dUTP diphosphatase -
  JZ789_RS11120 (JZ789_11035) - 2232577..2233722 (-) 1146 WP_226316922.1 site-specific integrase -
  JZ789_RS11125 - 2234189..2234716 (-) 528 WP_226316966.1 helix-turn-helix domain-containing protein -
  JZ789_RS11130 (JZ789_11045) - 2234922..2235122 (+) 201 WP_015647585.1 helix-turn-helix transcriptional regulator -
  JZ789_RS11135 (JZ789_11050) - 2235140..2235838 (+) 699 WP_226316923.1 Rha family transcriptional regulator -
  JZ789_RS11140 (JZ789_11055) - 2235851..2236477 (+) 627 WP_226316924.1 Rha family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50002.51 Da        Isoelectric Point: 6.1911

>NTDB_id=479033 JZ789_RS11105 WP_004298358.1 2230119..2231489(-) (radA) [Streptococcus suis strain GX69]
MTIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVISVTTIGEVLQKVFNL

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=479033 JZ789_RS11105 WP_004298358.1 2230119..2231489(-) (radA) [Streptococcus suis strain GX69]
ATGACCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTCAGTCTGACAGGTG
AGAAGACCCGTCCTATGAAGCTCAATGAAGTGTCGTCCATTCAAGTGGCCCGCACCAAGACCAATATGGAAGAGTTTAAC
CGTGTCCTTGGTGGCGGCGTGGTGCCGGGCAGTCTGGTCCTGATTGGAGGCGATCCAGGGATTGGCAAATCGACCTTGCT
CCTGCAAGTATCGACCCAACTTTCGACTATTGGCACCGTCCTCTATGTGTCGGGGGAAGAGTCTGCCCAGCAGATTAAGT
TGCGAGCGGAGCGTTTGGGCGACATTGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACTGAG
ATTGAGAAAATCAAGCCAGATTTCCTGATTATCGACTCTATCCAGACCATTATGAGCCCTGACATTTCTAGCGTGCAAGG
TTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAGCTTATGCAGATTGCCAAGACCAACAATATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGCACCCTGGCTGGACCGCGGACCTTGGAGCACATGGTAGACACCGTTCTCTATTTTGAGGGC
GAGCGTCAACACACCTTCCGTATCTTGAGGGCGGTCAAAAATCGCTTTGGCTCCACCAACGAAATCGGTATTTTTGAAAT
GCAGTCGCAGGGCTTGGTCGAAGTTCTCAATCCAAGTGAGGTCTTTCTGGAAGAGCGTCTGGACGGAGCGACTGGCTCGG
CTATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCCGAAGTGCAGGCTCTGGTGACCCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGATTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCCGGTCTGCT
CCTCCAAAACCAAGATGCCTACCTTAAGTCAGCAGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTAGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGACAAGCCAACCAACCCACAAGAGTGCTTTATAGGCGAGATTGGCCTGACAGGGGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACCAAGGTCTATGCCCCAAAAAA
TTCCCTGACAGGTATCAAGGTGCCCAAGGAAATCACCGTTATCAGCGTGACCACCATTGGCGAAGTCTTGCAGAAAGTAT
TCAACTTATGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.15

99.123

0.904
  radA Streptococcus pneumoniae D39

90.929

99.123

0.901
  radA Streptococcus pneumoniae R6

90.929

99.123

0.901
  radA Streptococcus pneumoniae Rx1

90.929

99.123

0.901
  radA Streptococcus pneumoniae TIGR4

90.929

99.123

0.901
  radA Streptococcus mitis SK321

90.708

99.123

0.899
  radA/sms Bacillus subtilis subsp. subtilis str. 168

62.472

99.342

0.621