Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   NMBG2136_RS02255 Genome accession   NC_017513
Coordinates   426944..427489 (-) Length   181 a.a.
NCBI ID   WP_014580739.1    Uniprot ID   -
Organism   Neisseria meningitidis G2136     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 421944..432489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBG2136_RS02240 (NMBG2136_0405) aroB 421983..423062 (-) 1080 WP_002221481.1 3-dehydroquinate synthase -
  NMBG2136_RS02245 (NMBG2136_0406) - 423142..423654 (-) 513 WP_002214526.1 shikimate kinase -
  NMBG2136_RS02250 (NMBG2136_0407) pilQ 424616..426925 (-) 2310 WP_002221480.1 type IV pilus secretin PilQ Machinery gene
  NMBG2136_RS02255 (NMBG2136_0408) pilP 426944..427489 (-) 546 WP_014580739.1 pilus assembly protein PilP Machinery gene
  NMBG2136_RS02260 (NMBG2136_0409) - 427507..428154 (-) 648 WP_002217908.1 type 4a pilus biogenesis protein PilO -
  NMBG2136_RS02265 (NMBG2136_0410) pilN 428155..428754 (-) 600 WP_002221479.1 PilN domain-containing protein Machinery gene
  NMBG2136_RS02270 (NMBG2136_0411) pilM 428757..429872 (-) 1116 WP_002214517.1 type IV pilus biogenesis protein PilM -
  NMBG2136_RS02275 (NMBG2136_0412) - 430024..432420 (+) 2397 WP_002221477.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20037.47 Da        Isoelectric Point: 4.6512

>NTDB_id=47896 NMBG2136_RS02255 WP_014580739.1 426944..427489(-) (pilP) [Neisseria meningitidis G2136]
MKHYALLISFLALSACSQGSEDLNEWTAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETDKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=47896 NMBG2136_RS02255 WP_014580739.1 426944..427489(-) (pilP) [Neisseria meningitidis G2136]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAGGTTCTGAGGACCTAAACGAATGGAC
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGACAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCTGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCGTCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

99.448

100

0.994

Multiple sequence alignment