Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   JZM58_RS28165 Genome accession   NZ_CP071797
Coordinates   6310644..6311048 (-) Length   134 a.a.
NCBI ID   WP_007953330.1    Uniprot ID   A0ABM5ZLE5
Organism   Pseudomonas fluorescens strain YK-310     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6305644..6316048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZM58_RS28150 (JZM58_28150) - 6307594..6309654 (-) 2061 WP_207984220.1 methyl-accepting chemotaxis protein -
  JZM58_RS28155 (JZM58_28155) - 6309668..6310207 (-) 540 WP_007953327.1 chemotaxis protein CheW -
  JZM58_RS28160 (JZM58_28160) pilH 6310218..6310583 (-) 366 WP_007953328.1 twitching motility response regulator PilH -
  JZM58_RS28165 (JZM58_28165) pilG 6310644..6311048 (-) 405 WP_007953330.1 twitching motility response regulator PilG Regulator
  JZM58_RS28170 (JZM58_28170) gshB 6311274..6312224 (+) 951 WP_192562716.1 glutathione synthase -
  JZM58_RS28175 (JZM58_28175) - 6312332..6313231 (+) 900 WP_007953332.1 energy transducer TonB -
  JZM58_RS28180 (JZM58_28180) - 6313405..6313977 (+) 573 WP_039767938.1 YqgE/AlgH family protein -
  JZM58_RS28185 (JZM58_28185) ruvX 6313977..6314414 (+) 438 WP_197867213.1 Holliday junction resolvase RuvX -
  JZM58_RS28190 (JZM58_28190) pyrR 6314496..6314999 (+) 504 WP_207984221.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  JZM58_RS28195 (JZM58_28195) - 6315027..6316031 (+) 1005 WP_007913665.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14532.86 Da        Isoelectric Point: 6.7107

>NTDB_id=478942 JZM58_RS28165 WP_007953330.1 6310644..6311048(-) (pilG) [Pseudomonas fluorescens strain YK-310]
MEQQSSALKVMVIDDSKTIRRTAETLLKNAGCEVITAIDGFDALAKIADHHPGIIFVDIMMPRLDGYQTCALIKNNNAFK
GTPVIMLSSRDGLFDKAKGRIVGSDQFLTKPFSKEELLDAISAHVPGFAAALPQ

Nucleotide


Download         Length: 405 bp        

>NTDB_id=478942 JZM58_RS28165 WP_007953330.1 6310644..6311048(-) (pilG) [Pseudomonas fluorescens strain YK-310]
ATGGAACAGCAGTCCAGCGCCTTGAAGGTCATGGTGATCGACGACTCGAAAACGATTCGTCGCACCGCCGAGACCCTGTT
GAAAAATGCAGGGTGCGAAGTCATCACCGCGATCGACGGTTTTGACGCCCTGGCGAAGATCGCCGACCACCATCCCGGGA
TCATCTTTGTCGACATCATGATGCCGCGTCTGGATGGTTATCAGACCTGCGCTTTAATCAAGAACAACAATGCGTTCAAG
GGCACGCCGGTGATCATGCTGTCGTCCCGGGACGGGCTGTTCGACAAGGCCAAGGGGCGGATTGTCGGTTCCGATCAATT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTCGACGCGATTTCGGCCCATGTTCCGGGCTTCGCTGCCGCTTTGCCGC
AGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.4

93.284

0.694